Files in seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

MD5

NAMESPACE

DESCRIPTION

R/RcppExports.R R/model_matrix.R R/em_dnm_mnhmm.R R/get_marginals.R R/seqHMM-deprecated.R R/mc_to_sc_data.R R/most_probable_cluster.R R/fill_time.R R/build_nhmm.R R/estimate_nhmm.R R/simulate_mhmm.R R/dnm_mnhmm.R R/simulate_hmm.R R/state_names.R R/mHMMplotgrid.R R/print.R R/em_nhmm.R R/estimate_mnhmm.R R/mhmm_biofam.R R/summary.mhmm.R R/em_mnhmm.R R/utilities.R R/get_probs.R R/cluster_names.R R/simulate_mnhmm.R R/ssp-deprecated.R R/check_build_arguments.R R/seqHMM-package.R R/em_dnm_nhmm.R R/plot_colors.R R/SSPlotter-deprecated.R R/hmm_biofam.R R/predict.R R/fanhmm_leaves.R R/mhmm_mvad.R R/plot.mhmm.R R/plot.hmm.R R/forwardBackward.R R/mssplot-deprecated.R R/ssplotM-deprecated.R R/transformations.R R/hmm_mvad.R R/build_mhmm.R R/create_base_nhmm.R R/create_initial_values.R R/build_lcm.R R/update.R R/hidden_paths.R R/biofam3c.R R/objective_functions.R R/stacked_sequence_plot.R R/dnm_nhmm.R R/summary.mnhmm.R R/fit_nhmm.R R/combine_models.R R/sort_sequences.R R/simulate_pars.R R/fit_model.R R/coef.R R/bootstrap.R R/ssplot-deprecated.R R/posterior_probs.R R/logLik.R R/isColor.R R/zzz.R R/plot.ssp-deprecated.R R/simulate_nhmm.R R/build_mm.R R/formulas.R R/build_mnhmm.R R/build_mmm.R R/fit_mnhmm.R R/mHMMplotint.R R/HMMplot.R R/mc_to_sc.R R/stslist_to_data.R R/trim_hmm.R R/nobs.R R/colorpalette.R R/spread_models.R R/vcov.mhmm.R R/gridplot.R R/separate_mhmm.R R/build_hmm.R

src/R_forward_fanhmm.cpp

src/R_EM_fanhmm.cpp

src/Makevars.win

src/R_loglik_mfanhmm.cpp

src/Makevars

src/pre2-forwardbackward.cpp

src/get_W_idx.h

src/sample.h

src/R_loglik_mnhmm.cpp

src/R_simulate_nhmm.cpp

src/forward.h

src/R_loglik_fanhmm.cpp

src/create_Q.h

src/R_forward_nhmm.cpp

src/get_parameters.cpp

src/R_predict_mnhmm.cpp

src/sample.cpp

src/RcppExports.cpp

src/eta_to_gamma.cpp

src/R_simulate_fanhmm.cpp

src/R_backward_mnhmm.cpp

src/pre2-optcoef.h

src/mnhmm.cpp

src/pre2-optCoef.cpp

src/EM_mnhmm.h

src/R_log_objective_nhmm.cpp

src/softmax.cpp

src/R_viterbi_fanhmm.cpp

src/cost_matrix.cpp

src/R_simulate_mnhmm.cpp

src/create_Q.cpp

src/reparma.cpp

src/mfanhmm.h

src/R_predict_mfanhmm.cpp

src/eta_to_gamma.h

src/R_predict_fanhmm.cpp

src/R_backward_nhmm.cpp

src/pre2-loglik.cpp

src/R_viterbi_mfanhmm.cpp

src/joint_probability.cpp

src/pre2-forward_backward.h

src/R_predict_nhmm.cpp

src/R_log_objective_fanhmm.cpp

src/useomp.h

src/backward.h

src/R_EM_nhmm.cpp

src/logsumexp.h

src/list_to_field.cpp

src/softmax.h

src/joint_probability.h

src/get_W_idx.cpp

src/R_log_objective_mfanhmm.cpp

src/R_backward_fanhmm.cpp

src/R_forward_mnhmm.cpp

src/R_EM_mnhmm.cpp

src/viterbi.h

src/R_EM_mfanhmm.cpp

src/nhmm.cpp

src/reparma.h

src/R_simulate_mfanhmm.cpp

src/EM_mnhmm.cpp

src/R_viterbi_nhmm.cpp

src/pre2-log_EM.cpp

src/get_parameters.h

src/config.h

src/sum_to_zero.h

src/fanhmm.cpp

src/mfanhmm.cpp

src/nhmm.h

src/pre2-log_forward_backward.h

src/pre2-log_forwardbackward.cpp

src/pre2-EM.cpp

src/EM_nhmm.h

src/pre2-objective.cpp

src/logSumExp.cpp

src/mnhmm.h

src/list_to_field.h

src/R_backward_mfanhmm.cpp

src/R_log_objective_mnhmm.cpp

src/R_viterbi_mnhmm.cpp

src/pre2-viterbi.cpp

src/R_loglik_nhmm.cpp

src/viterbi.cpp

src/fast_quantiles.cpp

src/sum_to_zero.cpp

src/pre2-log_objective.cpp

src/EM_nhmm.cpp

src/fanhmm.h

src/R_forward_mfanhmm.cpp

inst/CITATION

inst/doc/seqHMM_estimation.pdf

inst/doc/seqHMM_algorithms.Rnw

inst/doc/seqHMM_visualization.Rnw

inst/doc/seqHMM.pdf

inst/doc/seqHMM.Rnw

inst/doc/seqHMM_estimation.Rnw

inst/doc/seqHMM_visualization.R inst/doc/seqHMM_algorithms.pdf inst/doc/seqHMM_visualization.pdf inst/doc/seqHMM.R

build/vignette.rds

vignettes/seqHMM-concordance.tex

vignettes/references_for_vignettes.bib

vignettes/seqHMM_algorithms.Rnw

vignettes/references.bib

vignettes/seqHMM_visualization.Rnw

vignettes/seqHMM.Rnw

vignettes/seqHMM_estimation.Rnw

vignettes/sc_fit.rds

vignettes/mhmm.rds

data/mhmm_biofam.rda

data/hmm_biofam.rda

data/biofam3c.rda

data/hmm_mvad.rda

data/mhmm_mvad.rda

data/leaves.rda

data/fanhmm_leaves.rda

data/colorpalette.rda

man/build_hmm.Rd man/mhmm_biofam.Rd man/leaves.Rd man/ssplot.Rd man/build_mm.Rd man/most_probable_cluster.Rd man/posterior_cluster_probabilities.Rd man/state_names.Rd man/predict.Rd man/update_nhmm.Rd man/bootstrap.Rd man/reexports.Rd man/mhmm_mvad.Rd man/cluster_probs.Rd man/build_lcm.Rd man/seqHMM-package.Rd man/plot.hmm.Rd man/transition_probs.Rd man/coef.Rd man/plot.ssp.Rd man/posterior_probs.Rd man/plot_colors.Rd man/ssp.Rd man/summary.mhmm.Rd man/hidden_paths.Rd man/hmm_mvad.Rd man/summary.mnhmm.Rd man/mc_to_sc.Rd man/cluster_names-set.Rd man/plot.mhmm.Rd man/cluster_names.Rd man/gridplot.Rd man/initial_probs.Rd man/data_to_stslist.Rd man/logLik_nhmm.Rd man/estimate_mnhmm.Rd man/mc_to_sc_data.Rd man/build_mmm.Rd man/biofam3c.Rd man/simulate_hmm.Rd man/fanhmm_leaves.Rd man/simulate_pars.Rd man/simulate_mnhmm.Rd man/nobs.Rd man/print.Rd man/seqHMM-deprecated.Rd man/estimate_nhmm.Rd man/get_marginals.Rd man/forward_backward.Rd man/colorpalette.Rd man/separate_mhmm.Rd man/mssplot.Rd man/sort_sequences.Rd man/simulate_mhmm.Rd man/vcov.mhmm.Rd man/hmm_biofam.Rd man/simulate_nhmm.Rd man/logLik_hmm.Rd man/build_mhmm.Rd man/emission_probs.Rd man/return_msg.Rd man/fit_model.Rd man/trim_model.Rd man/stacked_sequence_plot.Rd

seqHMM documentation built on June 8, 2025, 10:16 a.m.

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seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

Files in seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

R Package Documentation

Browse R Packages

We want your feedback!

seqHMM Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

Files in seqHMM Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

R Package Documentation

Browse R Packages

We want your feedback!

seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

Files in seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series