NEWS.md

In sismonr: Simulation of in Silico Multi-Omic Networks

sismonr 2.1.0

• Automatically updates BioSimulator to v0.9.3
• Accounts for changes of syntax in BioSimulator v0.9.3
• Names of possible stochastic simulation algorithms changed

sismonr 2.0.1

• Forces the installation of BioSimulator v0.5.1

sismonr 2.0.0

New features

• Added a function to transform abundance data into RNAseq-like data (read counts)

Stochastic model

• Added the degradation of molecules even if bound to another molecule or in a complex
• Ploidy is now defined for a system, not for a population
• Initial abundances are now available when generating a population, calculated accounting for the ploidy of the system
• Corrected a mistake in the addEdge function for sampling of kinetic parameters

Visualisation features

• Added the option to focus on a subset of genes/complexes for plotSimulation and plotHeatMap functions
• Corrected y-axis title for plotSimulation function

sismonr 1.1.4

• tests fixed for Solaris installation.

sismonr 1.1.3

• .onAttach function fixed for Solaris installation.

sismonr 1.1.2

• Added tests (with condition for skipping tests if Julia v1.0 or later is not installed)
• Re-submission to CRAN

sismonr 1.1.1

• Added a check of the existing version of Julia when attaching the package.
• Submission to CRAN

sismonr documentation built on Feb. 11, 2020, 9:07 a.m.