evaluatePars: Evaluate parameters for optimization
In soundgen: Sound Synthesis and Acoustic Analysis

evaluatePars

R Documentation

Evaluate parameters for optimization

Description

Internal soundgen function.

Usage

evaluatePars(
  p,
  pars,
  myfun,
  bounds = NULL,
  fitnessPar,
  fitnessFun = function(x) 1 - cor(x, key, use = "pairwise.complete.obs"),
  myfolder,
  key,
  otherPars = list(plot = FALSE),
  verbose = TRUE
)

Arguments

`p`	numeric vector of evaluated values of parameters
`pars`	names of arguments to `myfun` that should be optimized
`myfun`	the function being optimized: either 'segment' or 'analyze' (in quotes)
`bounds`	a list setting the lower and upper boundaries for possible values of optimized parameters. For ex., if we optimize `smooth` and `smoothOverlap`, reasonable bounds might be list(low = c(5, 0), high = c(500, 95))
`fitnessPar`	the name of output variable that we are comparing with the key, e.g. 'nBursts' or 'pitch_median'
`fitnessFun`	the function used to evaluate how well the output of `myfun` fits the key. Defaults to 1 - Pearson's correlation (i.e. 0 is perfect fit, 1 is awful fit). For pitch, log scale is more meaningful, so a good fitness criterion is "function(x) 1 - cor(log(x), log(key), use = 'pairwise.complete.obs')"
`myfolder`	path to where the .wav files live
`key`	a vector containing the "correct" measurement that we are aiming to reproduce
`otherPars`	a list of additional arguments to `myfun`
`verbose`	if TRUE, reports the values of parameters evaluated and fitness