spBayes: Univariate and Multivariate Spatial-Temporal Modeling

Fits univariate and multivariate spatio-temporal random effects models for point-referenced data using Markov chain Monte Carlo (MCMC). Details are given in Finley, Banerjee, and Gelfand (2015; <doi:10.18637/jss.v063.i13>) and Finley, Banerjee, and Cook (2014; <doi:10.1111/2041-210X.12189>).

Install the latest version of this package by entering the following in R:
install.packages("spBayes")
AuthorAndrew O. Finley <finleya@msu.edu>, Sudipto Banerjee <sudiptob@biostat.umn.edu>
Date of publication2017-04-12 22:44:33 UTC
MaintainerAndrew Finley <finleya@msu.edu>
LicenseGPL (>= 2)
Version0.4-0
http://blue.for.msu.edu/software.html

View on CRAN

Man pages

adaptMetropGibbs: Adaptive Metropolis within Gibbs algorithm

bayesGeostatExact: Simple Bayesian spatial linear model with fixed semivariogram...

bayesLMConjugate: Simple Bayesian linear model via the Normal/inverse-Gamma...

bayesLMRef: Simple Bayesian linear model with non-informative priors

BEF.dat: Bartlett Experimental Forest inventory data

FBC07.dat: Synthetic multivariate data with spatial and non-spatial...

FORMGMT.dat: Data used for illustrations

iDist: Euclidean distance matrix

mkMvX: Make a multivariate design matrix

mkSpCov: Function for calculating univariate and multivariate...

NETemp.dat: Monthly weather station temperature data across the...

NYOzone.dat: Observations of ozone concentration levels.

pointsInPoly: Finds points in a polygon

spDiag: Model fit diagnostics

spDynLM: Function for fitting univariate Bayesian dynamic space-time...

spGLM: Function for fitting univariate Bayesian generalized linear...

spLM: Function for fitting univariate Bayesian spatial regression...

spMisalignGLM: Function for fitting multivariate generalized linear Bayesian...

spMisalignLM: Function for fitting multivariate Bayesian spatial regression...

spMvGLM: Function for fitting multivariate Bayesian generalized linear...

spMvLM: Function for fitting multivariate Bayesian spatial regression...

spPredict: Function for new locations given a model object

spRecover: Function for recovering regression coefficients and spatial...

WEF.dat: Western Experimental Forest inventory data

Zurich.dat: Zurichberg Forest inventory data

Functions

adaptMetropGibbs Man page
bayesGeostatExact Man page
bayesLMConjugate Man page
bayesLMRef Man page
BEF.dat Man page
FBC07.dat Man page
FORMGMT.dat Man page
iDist Man page
mkMvX Man page
mkSpCov Man page
NETemp.dat Man page
NYOzone.dat Man page
pointsInPoly Man page
spDiag Man page
spDynLM Man page
spGLM Man page
spLM Man page
spMisalignGLM Man page
spMisalignLM Man page
spMvGLM Man page
spMvLM Man page
spPredict Man page
spRecover Man page
WEF.dat Man page
Zurich.dat Man page

Files

inst
inst/CITATION
inst/NOTES
inst/ChangeLog
src
src/Makevars
src/spMisalignRecover.cpp
src/spMisalignGLMPredict.cpp
src/idist.cpp
src/spMvGLM.cpp
src/spPPMvGLMPredict.cpp
src/spDynLM.cpp
src/mkSpCov.cpp
src/spLM.cpp
src/spPPMvGLM_AMCMC.cpp
src/spMvLM.cpp
src/spPPMvGLM.cpp
src/ptsInPoly.cpp
src/adaptMetropGibbs.cpp
src/spMisalign.cpp
src/spGLM.cpp
src/spMvGLM_AMCMC.cpp
src/spBayes.h
src/spPPLMPredict.cpp
src/spMvGLMPredict.cpp
src/spLMPredict.cpp
src/util.h
src/spPPLM.cpp
src/spLMRecover.cpp
src/spPPDynLM.cpp
src/spPPMvLMPredict.cpp
src/spPPGLM.cpp
src/spPPMvLMRecover.cpp
src/spPPMvLM.cpp
src/spMisalignPredict.cpp
src/util.cpp
src/init.cpp
src/spMvLMPredict.cpp
src/spMvLMRecover.cpp
src/spPPGLM_AMCMC.cpp
src/spGLM_AMCMC.cpp
src/spMisalignGLM.cpp
src/nonSpGLM_AMCMC.cpp
src/spPPLMRecover.cpp
src/spMPPMvDIC.cpp
NAMESPACE
data
data/BEF.dat.tab.gz
data/FORMGMT.dat.tab.gz
data/Zurich.dat.tab.gz
data/NYOzone.dat.tab.gz
data/WEF.dat.csv.gz
data/FBC07.dat.tab.gz
data/NETemp.dat.tab.gz
R
R/spMisalignGLM.R R/spMvGLM.R R/adaptMetropGibbs.R R/spGLM.R R/spPredict.R R/mkMatUtil.R R/spDynLM.R R/pointsInPoly.R R/spRecover.R R/bayesRegression.R R/spMisalignLM.R R/spDiag.R R/bayesUtilities.R R/spCor.R R/spMvLM.R R/bayesLMRef.R R/spLM.R R/mkSpCov.R R/idist.R
MD5
DESCRIPTION
man
man/adaptMetropGibbs.Rd man/mkMvX.Rd man/spPredict.Rd man/NETemp.dat.Rd man/bayesGeostatExact.Rd man/spMvGLM.Rd man/spDiag.Rd man/spLM.Rd man/NYOzone.dat.Rd man/spMvLM.Rd man/spRecover.Rd man/BEF.dat.Rd man/bayesLMConjugate.Rd man/FBC07.dat.Rd man/pointsInPoly.Rd man/mkSpCov.Rd man/bayesLMRef.Rd man/FORMGMT.dat.Rd man/iDist.Rd man/spMisalignLM.Rd man/spGLM.Rd man/spMisalignGLM.Rd man/WEF.dat.Rd man/Zurich.dat.Rd man/spDynLM.Rd

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