API for spant
MR Spectroscopy Analysis Tools

Global functions
.onAttach	Source code
.onLoad	Source code
Arg.mrs_data	Man page Source code
Conj.mrs_data	Man page Source code
G	Source code
H	Source code
Im.mrs_data	Man page Source code
Im_pauli	Source code
Imzap	Man page Source code
Ip_pauli	Source code
Ix_pauli	Source code
Iy_pauli	Source code
Iz_pauli	Source code
L	Source code
Mod.mrs_data	Man page Source code
Ncoils	Man page Source code
Ndyns	Man page Source code
Npts	Man page Source code
Nspec	Man page Source code
Ntrans	Man page Source code
Nx	Man page Source code
Ny	Man page Source code
Nz	Man page Source code
Re.mrs_data	Man page Source code
`*.mrs_data`	Source code
`+.basis_set`	Source code
`+.mrs_data`	Source code
`-.basis_set`	Source code
`-.mrs_data`	Source code
`/.mrs_data`	Source code
abfit	Source code
abfit_3p_obj	Source code
abfit_full_anal_jac	Source code
abfit_full_anal_jac_test	Source code
abfit_full_num_jac	Source code
abfit_full_obj	Source code
abfit_opts	Man page Source code
abfit_opts_v1_9_0	Man page Source code
abfit_partial_num_jac	Source code
acquire	Man page Source code
add_alpha	Source code
add_noise	Man page Source code
add_noise_spec_snr	Man page Source code
align	Man page Source code
alpha2lw	Source code
apodise_xy	Man page Source code
append_basis	Man page Source code
append_coils	Man page Source code
append_dyns	Man page Source code
append_metab_combs	Source code
append_regs	Man page Source code
append_scan	Source code
apply_axes	Man page Source code
apply_mrs	Man page Source code
apply_pulse	Man page Source code
array2mrs_data	Man page Source code
asy_fwhm_fn	Source code
asy_pvoigt_ls	Source code
auto_pad_seq	Source code
auto_phase	Man page Source code
auto_phase_vec	Source code
auto_pspline_smoother	Source code
back_extrap_ar	Man page Source code
back_extrap_vec	Source code
basis2dyn_mrs_data	Man page Source code
basis2mrs_data	Man page Source code
bbase	Man page Source code
bc	Source code
bc_als	Man page Source code
bc_als_vec	Source code
bc_constant	Man page Source code
bc_gauss	Man page Source code
bc_gauss_vec	Source code
bc_poly	Man page Source code
bc_poly_vec	Source code
bc_spline	Man page Source code
bc_spline_vec	Source code
beta2lw	Man page Source code
bin_spec	Man page Source code
bin_vec	Source code
calc_ahat	Source code
calc_basis_corr_mat	Man page Source code
calc_basis_crlbs	Man page Source code
calc_coil_noise_cor	Man page Source code
calc_coil_noise_sd	Man page Source code
calc_design_efficiency	Man page Source code
calc_ed_from_lambda	Man page Source code
calc_ed_from_lambda_stable	Source code
calc_lambda_from_ed	Source code
calc_peak_info_vec	Man page Source code
calc_sd_poly	Man page Source code
calc_siemens_paras	Source code
calc_spec_diff	Man page Source code
calc_spec_snr	Man page Source code
check_dyn_input	Source code
check_geom	Source code
check_lcm	Man page Source code
check_mrs_data	Source code
check_tqn	Man page Source code
circ_mask	Man page Source code
coherence_filter	Man page Source code
colSdColMeans	Source code
collapse_to_dyns	Man page Source code
collapse_to_dyns.fit_result	Man page Source code
collapse_to_dyns.mrs_data	Man page Source code
comb_coils	Man page Source code
comb_coils_mrsi_gls	Man page Source code
comb_coils_svs_gls	Man page Source code
comb_fit_list_fit_tables	Man page Source code
comb_fit_list_result_tables	Man page Source code
comb_fit_tables	Man page Source code
comb_metab_ref	Man page Source code
conv_align	Source code
conv_filt_vec	Source code
conv_mrs	Man page Source code
convolve_td	Source code
cplx_median	Source code
cplx_sum_sq	Source code
crop_basis	Man page Source code
crop_range	Source code
crop_spec	Man page Source code
crop_td_pts	Man page Source code
crop_td_pts_end	Man page Source code
crop_td_pts_pot	Man page Source code
crop_xy	Man page Source code
cross	Source code
crossprod_3d	Man page Source code
decimate_mrs_fd	Man page Source code
decimate_mrs_td	Man page Source code
deconv_mrs	Man page Source code
def_N	Man page Source code
def_acq_paras	Man page Source code
def_fs	Man page Source code
def_ft	Man page Source code
def_nuc	Man page Source code
def_ref	Man page Source code
depth	Source code
dicom_reader	Man page Source code
diff_mrs	Man page Source code
dim.fit_result	Source code
dim.mrs_data	Source code
downsample_mrs_fd	Man page Source code
downsample_mrs_td	Man page Source code
dyn_acq_times	Man page Source code
ecc	Man page Source code
ecc_1d_array	Source code
ecc_2d_array	Source code
ecc_ref	Source code
ed_obj_fn	Source code
elliptical_mask	Man page Source code
est_noise_sd	Man page Source code
est_noise_sd_vec	Source code
extract_dkd_wref_scans	Source code
fGSLAlmEqual	Source code
fGSLCalcPRS	Source code
fGSLClassOri	Source code
fd2td	Man page Source code
fd_conv_filt	Man page Source code
fd_gauss_smo	Man page Source code
fd_projection	Source code
fd_re_projection	Source code
find_bids_mrs	Man page Source code
find_mrs_files	Man page Source code
fit_amps	Man page Source code
fit_diags	Man page Source code
fit_mrs	Man page Source code
fit_res2csv	Man page Source code
fit_t1_ti_array	Man page Source code
fit_t1_tr_array	Man page Source code
fit_t2_te_array	Man page Source code
fp_mag	Source code
fp_phase	Man page Source code
fp_phase_correct	Man page Source code
fp_scale	Man page Source code
fs	Man page Source code
ft	Source code
ft_dyns	Man page Source code
ft_shift	Man page Source code
ft_shift_mat	Man page Source code
gauss_smo_vec	Source code
gausswin_2d	Man page Source code
gen_F	Man page Source code
gen_F_xy	Man page Source code
gen_I	Man page Source code
gen_baseline_reg	Man page Source code
gen_bold_reg	Man page Source code
gen_conv_reg	Man page Source code
gen_glm_spec_report	Source code
gen_group_reg	Man page Source code
gen_hrf	Source code
gen_impulse_reg	Man page Source code
gen_poly_reg	Man page Source code
gen_trap_reg	Man page Source code
generate_sp_basis	Source code
get_1h_brain_basis_names	Man page Source code
get_1h_brain_basis_paras	Man page Source code
get_1h_brain_basis_paras_v1	Man page Source code
get_1h_brain_basis_paras_v2	Man page Source code
get_1h_brain_basis_paras_v3	Man page Source code
get_1h_braino_basis_names	Man page Source code
get_1h_spectre_basis_names	Man page Source code
get_2d_psf	Man page Source code
get_2hg_paras	Source code
get_a_glc_paras	Source code
get_ace_paras	Source code
get_acq_paras	Man page Source code
get_ala_paras	Source code
get_asc_paras	Source code
get_asp_paras	Source code
get_atp_31p_paras	Source code
get_b_glc_paras	Source code
get_basis_subset	Man page Source code
get_bhb_paras	Source code
get_cho_paras	Source code
get_cho_rt_paras	Source code
get_cit_paras	Source code
get_corr_factor	Source code
get_cr_ch2_rt_paras	Source code
get_cr_ch3_rt_paras	Source code
get_cr_paras	Source code
get_dyns	Man page Source code
get_even_dyns	Man page Source code
get_fh_dyns	Man page Source code
get_fit_map	Man page Source code
get_fp	Man page Source code
get_gaba_jn_paras	Source code
get_gaba_paras	Source code
get_gaba_rt_paras	Source code
get_glc_paras	Source code
get_gln_paras	Source code
get_glu_paras	Source code
get_glu_rt_paras	Source code
get_gly_paras	Source code
get_glyc_paras	Source code
get_gpc_31p_paras	Source code
get_gpc_paras	Source code
get_gpe_31p_paras	Source code
get_gsh_paras	Source code
get_guassian_pulse	Man page Source code
get_h2o_paras	Source code
get_head_dyns	Man page Source code
get_ins_paras	Source code
get_ins_rt_paras	Source code
get_lac_paras	Source code
get_lac_rt_paras	Source code
get_lcm_cmd	Man page Source code
get_lip09_paras	Source code
get_lip13a_paras	Source code
get_lip13b_paras	Source code
get_lip20_paras	Source code
get_m_cr_ch2_paras	Source code
get_metab	Man page Source code
get_mm09_paras	Source code
get_mm12_paras	Source code
get_mm14_paras	Source code
get_mm17_paras	Source code
get_mm20_paras	Source code
get_mm_3t_paras	Source code
get_mol_names	Man page Source code
get_mol_para_list_names	Source code
get_mol_paras	Man page Source code
get_mrs_affine	Man page Source code
get_mrsi2d_seg	Man page Source code
get_mrsi_voi	Man page Source code
get_mrsi_voxel	Man page Source code
get_mrsi_voxel_xy_psf	Man page Source code
get_msm_paras	Source code
get_naa2_paras	Source code
get_naa_paras	Source code
get_naa_rt_paras	Source code
get_naag_ch3_paras	Source code
get_naag_paras	Source code
get_nadh_31p_paras	Source code
get_nadp_31p_paras	Source code
get_odd_dyns	Man page Source code
get_para_val	Source code
get_pch_31p_paras	Source code
get_pch_paras	Source code
get_pcr_31p_paras	Source code
get_pcr_paras	Source code
get_pe_31p_paras	Source code
get_peth_paras	Source code
get_pfile_dict	Source code
get_pfile_vars	Source code
get_pi_31p_paras	Source code
get_pyr_paras	Source code
get_ref	Man page Source code
get_seg_ind	Man page Source code
get_ser_paras	Source code
get_sh_dyns	Man page Source code
get_sins_paras	Source code
get_slice	Man page Source code
get_spin_num	Man page Source code
get_subset	Man page Source code
get_suc_paras	Source code
get_svs_voi	Man page Source code
get_tail_dyns	Man page Source code
get_tau_paras	Source code
get_td_amp	Man page Source code
get_thr_paras	Source code
get_tqn_cmd	Man page Source code
get_uncoupled_mol	Man page Source code
get_val_paras	Source code
get_voi_cog	Man page Source code
get_voi_seg	Man page Source code
get_voi_seg_psf	Man page Source code
get_voxel	Man page Source code
ginv	Source code
glm_spec	Man page Source code
glm_spec_fmrs_fl	Man page Source code
glm_spec_fmrs_group	Man page Source code
glm_spec_group_level	Source code
glm_spec_group_linhyp	Man page Source code
grid_shift_xy	Man page Source code
gridplot	Man page Source code
gridplot.list	Source code
gridplot.mrs_data	Man page Source code
guess_mrs_format	Source code
hamming_vec	Source code
hankel.matrix	Source code
hilbert	Source code
hsvd	Man page Source code
hsvd_filt	Man page Source code
hsvd_filt_vec	Source code
hsvd_vec	Man page Source code
hz	Man page Source code
hz2ppm	Source code
ift	Source code
ift_shift	Man page Source code
ift_shift_mat	Man page Source code
image.mrs_data	Man page Source code
img2kspace_xy	Man page Source code
int_spec	Man page Source code
interleave_dyns	Man page Source code
interpolate_nas	Source code
inv_even_dyns	Man page Source code
inv_odd_dyns	Man page Source code
is.def	Man page Source code
is.installed	Source code
is_fd	Man page Source code
is_fid_filt_dist	Source code
is_svs	Source code
kspace2img_xy	Man page Source code
l2_norm_vec	Source code
l2_reg	Man page Source code
lb	Man page Source code
lb.basis_set	Man page Source code
lb.list	Man page Source code
lb.mrs_data	Man page Source code
lcmodel_fit	Source code
lofdc	Man page Source code
lofdc_obj_fn	Source code
lw2alpha	Man page Source code
lw2beta	Man page Source code
lw_obj_fn	Source code
make_basis_from_raw	Man page Source code
mask_dyns	Man page Source code
mask_fit_res	Man page Source code
mask_xy	Man page Source code
mask_xy_corners	Man page Source code
mask_xy_ellipse	Man page Source code
mask_xy_mat	Man page Source code
mat2mrs_data	Man page Source code
matexp	Man page Source code
max_cplx	Source code
max_mrs	Man page Source code
max_mrs_interp	Man page Source code
mean.list	Man page Source code
mean.mrs_data	Man page Source code
mean_dyn_blocks	Man page Source code
mean_dyn_pairs	Man page Source code
mean_dyns	Man page Source code
mean_mrs_list	Man page Source code
mean_vec_blocks	Man page Source code
measure_lorentz_amp	Source code
measure_td_amp	Source code
measure_td_amp_poly	Source code
median_dyns	Man page Source code
mod_td	Man page Source code
mrs_data	Source code
mrs_data2basis	Man page Source code
mrs_data2bids	Man page Source code
mrs_data2mat	Man page Source code
mrs_data2spec_mat	Man page Source code
mrs_data2vec	Man page Source code
mvfftshift	Man page Source code
mvifftshift	Man page Source code
n2coord	Man page Source code
n2hz	Source code
nifti_flip_lr	Man page Source code
nnls	Source code
one_page_pdf	Man page Source code
optim_fp	Source code
optim_rats	Source code
optim_set_lw	Source code
ortho3	Man page Source code
ortho3_inter	Man page Source code
peak_info	Man page Source code
pg_extrap_xy	Man page Source code
phase	Man page Source code
phase_drift_obj_fn_td	Source code
phase_obj_fn	Source code
phase_ref_1h_brain	Man page Source code
plot.basis_set	Source code
plot.fit_result	Man page Source code
plot.mrs_data	Man page Source code
plot_bc	Man page Source code
plot_reg	Man page Source code
plot_slice_fit	Man page Source code
plot_slice_fit_inter	Man page Source code
plot_slice_map	Man page Source code
plot_slice_map_inter	Man page Source code
plot_spec_sd	Man page Source code
plot_voi_overlay	Man page Source code
plot_voi_overlay_seg	Man page Source code
pnnls	Source code
ppm	Man page Source code
ppm.fit_result	Man page Source code
ppm.mrs_data	Man page Source code
ppm2hz	Source code
precomp	Man page Source code
preproc_svs	Man page Source code
preproc_svs_dataset	Man page Source code
print.basis_set	Source code
print.fit_result	Man page Source code
print.mol_parameters	Source code
print.mrs_data	Man page Source code
pts	Source code
qn_states	Man page Source code
rats	Man page Source code
rats_obj_fn	Source code
rawToHex	Source code
re_max	Source code
re_max_interp	Source code
re_mean	Source code
re_sd	Source code
re_weighting	Man page Source code
readNifti	Man page
read_basis	Man page Source code
read_char	Source code
read_dicom	Source code
read_float32	Source code
read_ima	Source code
read_ima_coil_dir	Man page Source code
read_ima_dyn_dir	Man page Source code
read_int16	Source code
read_int32	Source code
read_lcm_coord	Man page Source code
read_lcm_raw	Source code
read_list_data	Source code
read_mrs	Man page Source code
read_mrs_dpt	Source code
read_mrs_jmrui_txt	Source code
read_mrs_nifti	Source code
read_mrs_tqn	Man page Source code
read_paravis_raw	Source code
read_pfile	Source code
read_pfile_header	Source code
read_philips_dicom	Source code
read_philips_priv_dicom	Source code
read_pulse_ascii	Man page Source code
read_pulse_bruker	Man page Source code
read_pulse_pta	Man page Source code
read_raw	Source code
read_rda	Source code
read_sdat	Source code
read_sdat_slow	Source code
read_siemens_dicom	Source code
read_siemens_txt_hdr	Man page Source code
read_spar_sdat	Source code
read_tqn_fit	Man page Source code
read_tqn_result	Man page Source code
read_twix	Source code
read_uih_dicom	Source code
read_uint16	Source code
read_uint32	Source code
read_uint64	Source code
read_varian	Source code
recon_imag	Man page Source code
recon_imag_vec	Man page Source code
recon_twix_2d_mrsi	Man page Source code
rectangular_mask	Man page Source code
reexports	Man page
rep_array_dim	Man page Source code
rep_dyn	Man page Source code
rep_mrs	Man page Source code
resample_basis	Man page Source code
resample_img	Man page Source code
resample_voi	Man page Source code
reslice_to_mrs	Man page Source code
reson_table2mrs_data	Man page Source code
rm_dyns	Man page Source code
rotate_vec	Source code
scale_amp_molal	Man page Source code
scale_amp_molal_pvc	Man page Source code
scale_amp_molar	Man page Source code
scale_amp_molar2molal_pvc	Man page Source code
scale_amp_ratio	Man page Source code
scale_amp_ratio_value	Man page Source code
scale_amp_water_ratio	Man page Source code
scale_basis_amp	Man page Source code
scale_basis_from_singlet	Man page Source code
scale_mrs_amp	Man page Source code
scale_spec	Man page Source code
sd	Man page Source code
sd.default	Source code
sd.mrs_data	Man page Source code
seconds	Man page Source code
seq_cpmg_ideal	Man page Source code
seq_mega_press_ideal	Man page Source code
seq_press_2d_shaped	Man page Source code
seq_press_ideal	Man page Source code
seq_pulse_acquire	Man page Source code
seq_slaser_ideal	Man page Source code
seq_spin_echo_ideal	Man page Source code
seq_steam_ideal	Man page Source code
seq_steam_ideal_cof	Man page Source code
seq_steam_ideal_young	Man page Source code
set_Ntrans	Man page Source code
set_def_acq_paras	Man page Source code
set_dyns	Source code
set_lcm_cmd	Man page Source code
set_lw	Man page Source code
set_mask_xy_mat	Man page Source code
set_precomp_mode	Man page Source code
set_precomp_verbose	Man page Source code
set_ref	Man page Source code
set_td_pts	Man page Source code
set_tqn_cmd	Man page Source code
set_tr	Man page Source code
shift	Man page Source code
shift_basis	Man page Source code
shift_hz	Source code
sim_basis	Man page Source code
sim_basis_1h_brain	Man page Source code
sim_basis_1h_brain_press	Man page Source code
sim_basis_mm_lip_lcm	Man page Source code
sim_basis_tqn	Man page Source code
sim_brain_1h	Man page Source code
sim_mol	Man page Source code
sim_noise	Man page Source code
sim_resonances	Man page Source code
sim_resonances_fast	Source code
sim_resonances_fast2	Source code
sim_th_excit_profile	Man page Source code
sim_zero	Man page Source code
smooth_dyns	Man page Source code
smooth_high_freq_vec	Source code
sort_basis	Man page Source code
spant	Man page
spant-package	Man page
spant_abfit_benchmark	Man page Source code
spant_mpress_drift	Man page
spant_sim_fmrs_dataset	Man page Source code
spant_simulation_benchmark	Man page Source code
spec_decomp	Man page Source code
spec_op	Man page Source code
spin_sys	Man page Source code
split_metab_ref	Source code
spm_pve2categorical	Man page Source code
ssp	Man page Source code
stackplot	Man page Source code
stackplot.basis_set	Source code
stackplot.fit_result	Man page Source code
stackplot.list	Source code
stackplot.mrs_data	Man page Source code
sub_first_dyn	Man page Source code
sub_mean_dyns	Man page Source code
sub_median_dyns	Man page Source code
sum_coils	Man page Source code
sum_dyns	Man page Source code
sum_mrs	Man page Source code
sum_mrs_list	Man page Source code
summary.fit_result	Source code
svs_1h_brain_analysis	Man page Source code
svs_1h_brain_analysis_dev	Man page Source code
svs_1h_brain_batch_analysis	Man page Source code
t1_ti_array_obj	Source code
t1_tr_array_obj	Source code
t2_te_array_obj	Source code
t_test_spec	Man page Source code
tarquin_fit	Source code
td2fd	Man page Source code
td_conv_filt	Man page Source code
td_projection	Source code
tdsr	Man page Source code
te	Man page Source code
test_fit	Source code
tpower	Source code
tr	Man page Source code
varpro	Source code
varpro_3_para	Source code
varpro_3_para_anal_jac	Source code
varpro_3_para_obj	Source code
varpro_3_para_opts	Man page Source code
varpro_anal_jac	Source code
varpro_basic	Source code
varpro_basic_opts	Man page Source code
varpro_obj	Source code
varpro_opts	Man page Source code
vaxf2numeric	Source code
vec2mrs_data	Man page Source code
writeNifti	Man page
write_basis	Man page Source code
write_basis_tqn	Man page Source code
write_mrs	Man page Source code
write_mrs_dpt_v2	Source code
write_mrs_lcm_raw	Source code
write_mrs_nifti	Man page Source code
write_mrs_rds	Source code
write_pulse_ascii	Man page Source code
zero_fade_spec	Man page Source code
zero_higher_orders	Man page Source code
zero_td_pts_end	Man page Source code
zf	Man page Source code
zf.basis_set	Man page Source code
zf.list	Man page Source code
zf.mrs_data	Man page Source code
zf_xy	Man page Source code
zp_vec	Source code