spdep: Spatial Dependence: Weighting Schemes, Statistics and Models

Share:

A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.

Author
Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Abhirup Mallik [ctb, trl], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Date of publication
2016-09-21 11:25:06
Maintainer
Roger Bivand <Roger.Bivand@nhh.no>
License
GPL (>= 2)
Version
0.6-8
URLs

View on CRAN

Man pages

afcon
Spatial patterns of conflict in Africa 1966-78
aggregate.nb
Aggregate a spatial neighbours object
airdist
Measure distance from plot
anova.sarlm
Comparison of simultaneous autoregressive models
aple
Approximate profile-likelihood estimator (APLE)
aple.mc
Approximate profile-likelihood estimator (APLE) permutation...
aple.plot
Approximate profile-likelihood estimator (APLE) scatterplot
as_dgRMatrix_listw
Interface between Matrix class objects and weights lists
auckland
Marshall's infant mortality in Auckland dataset
autocov_dist
Distance-weighted autocovariate
baltimore
House sales prices, Baltimore, MD 1978
bhicv
Data set with 4 life condition indices of Belo Horizonte...
boston
Corrected Boston Housing Data
bptest.sarlm
Breusch-Pagan test for spatial models
card
Cardinalities for neighbours lists
cell2nb
Generate neighbours list for grid cells
choynowski
Choynowski probability map values
COL.OLD
Columbus OH spatial analysis data set - old numbering
columbus
Columbus OH spatial analysis data set
compon
Depth First Search on Neighbor Lists
diffnb
Differences between neighbours lists
dnearneigh
Neighbourhood contiguity by distance
do_ldet
Spatial regression model Jacobian computations
droplinks
Drop links in a neighbours list
EBest
Global Empirical Bayes estimator
EBImoran.mc
Permutation test for empirical Bayes index
EBlocal
Local Empirical Bayes estimator
edit.nb
Interactive editing of neighbours lists
eigenw
Spatial weights matrix eigenvalues
eire
Eire data sets
elect80
1980 Presidential election results
errorsarlm
Spatial simultaneous autoregressive error model estimation
geary
Compute Geary's C
geary.mc
Permutation test for Geary's C statistic
geary.test
Geary's C test for spatial autocorrelation
getisord
Getis-Ord remote sensing example data
globalG.test
Global G test for spatial autocorrelation
GMerrorsar
Spatial simultaneous autoregressive error model estimation by...
graphneigh
Graph based spatial weights
gstsls
Spatial simultaneous autoregressive SAC model estimation by...
hopkins
Hopkins burnt savanna herb remains
house
Lucas county OH housing
huddersfield
Prevalence of respiratory symptoms
impacts.sarlm
Impacts in spatial lag models
include.self
Include self in neighbours list
invIrM
Compute SAR generating operator
joincount.mc
Permutation test for same colour join count statistics
joincount.multi
BB, BW and Jtot join count statistic for k-coloured factors
joincount.test
BB join count statistic for k-coloured factors
knearneigh
K nearest neighbours for spatial weights
knn2nb
Neighbours list from knn object
lag.listw
Spatial lag of a numeric vector
lagmess
Matrix exponential spatial lag model
lagsarlm
Spatial simultaneous autoregressive lag model estimation
lee
Compute Lee's statistic
lee.mc
Permutation test for Lee's L statistic
lee.test
Lee's L test for spatial autocorrelation
lextrB
Find extreme eigenvalues of binary symmetric spatial weights
listw2sn
Spatial neighbour sparse representation
lm.LMtests
Lagrange Multiplier diagnostics for spatial dependence in...
lm.morantest
Moran's I test for residual spatial autocorrelation
lm.morantest.exact
Exact global Moran's I test
lm.morantest.sad
Saddlepoint approximation of global Moran's I test
localG
G and Gstar local spatial statistics
localmoran
Local Moran's I statistic
localmoran.exact
Exact local Moran's Ii tests
localmoran.sad
Saddlepoint approximation of local Moran's Ii tests
LR.sarlm
Likelihood ratio test
mat2listw
Convert a square spatial weights matrix to a weights list...
MCMCsamp
MCMC sample from fitted spatial regression
ME
Moran eigenvector GLM filtering
moran
Compute Moran's I
moran.mc
Permutation test for Moran's I statistic
moran.plot
Moran scatterplot
moran.test
Moran's I test for spatial autocorrelation
mstree
Find the minimal spanning tree
nb2blocknb
Block up neighbour list for location-less observations
nb2INLA
Output spatial neighbours for INLA
nb2lines
Use arc-type shapefiles for import and export of weights
nb2listw
Spatial weights for neighbours lists
nb2mat
Spatial weights matrices for neighbours lists
nb2WB
Output spatial weights for WinBUGS
nbcosts
Compute cost of edges
nbdists
Spatial link distance measures
nblag
Higher order neighbours lists
nboperations
Set operations on neighborhood objects
nc.sids
North Carolina SIDS data
NY_data
New York leukemia data
p.adjustSP
Adjust local association measures' p-values
plot.mst
Plot the Minimum Spanning Tree
plot.nb
Plot a neighbours list
plot.skater
Plot the object of skater class
poly2nb
Construct neighbours list from polygon list
predict.sarlm
Prediction for spatial simultaneous autoregressive linear...
probmap
Probability mapping for rates
prunecost
Compute cost of prune each edge
prunemst
Prune a Minimun Spanning Tree
read.gal
Read a GAL lattice file into a neighbours list
read.gwt2nb
Read and write spatial neighbour files
residuals.sarlm
Access functions for spatial simultaneous autoregressive...
rotation
Rotate a set of point by a certain angle
sacsarlm
Spatial simultaneous autoregressive SAC model estimation
set.mcOption
Options for parallel support
set.spChkOption
Control checking of spatial object IDs
similar.listw
Create symmetric similar weights lists
skater
Spatial 'K'luster Analysis by Tree Edge Removal
SpatialFiltering
Semi-parametric spatial filtering
spautolm
Spatial conditional and simultaneous autoregression model...
sp.correlogram
Spatial correlogram
spdep
Return package version number
sp.mantel.mc
Mantel-Hubert spatial general cross product statistic
spweights.constants
Provides constants for spatial weights matrices
ssw
Compute the sum of dissimilarity
stsls
Generalized spatial two stage least squares
subset.listw
Subset a spatial weights list
subset.nb
Subset a neighbours list
summary.nb
Print and summary function for neighbours and weights lists
summary.sarlm
summary method for class sarlm
testnb
Test a neighbours list for symmetry
tolerance.nb
Function to construct edges based on a tolerance angle and a...
tri2nb
Neighbours list from tri object
trW
Spatial weights matrix powers traces
used.cars
US 1960 used car prices
wheat
Mercer and Hall wheat yield data
write.nb.gal
Write a neighbours list as a GAL lattice file

Files in this package

spdep
spdep/inst
spdep/inst/CITATION
spdep/inst/README
spdep/inst/ChangeLog
spdep/inst/doc
spdep/inst/doc/sids.R
spdep/inst/doc/nb_igraph.html
spdep/inst/doc/backstore
spdep/inst/doc/backstore/boot_res.RData
spdep/inst/doc/backstore/nyME_res.RData
spdep/inst/doc/sids.pdf
spdep/inst/doc/SpatialFiltering.R
spdep/inst/doc/nb.R
spdep/inst/doc/nb.pdf
spdep/inst/doc/CO69.R
spdep/inst/doc/nb_igraph.R
spdep/inst/doc/SpatialFiltering.Rnw
spdep/inst/doc/sids.Rnw
spdep/inst/doc/nb.Rnw
spdep/inst/doc/nb_igraph.Rmd
spdep/inst/doc/CO69.Rnw
spdep/inst/doc/SpatialFiltering.pdf
spdep/inst/doc/CO69.pdf
spdep/inst/etc
spdep/inst/etc/misc
spdep/inst/etc/misc/nyadjwts.dbf
spdep/inst/etc/misc/geary_eire.txt
spdep/inst/etc/misc/nc_xtra.dbf
spdep/inst/etc/misc/nydata.dbf
spdep/inst/etc/misc/raw_grass_borders.RData
spdep/inst/etc/misc/unstand_sn.txt
spdep/inst/etc/shapes
spdep/inst/etc/shapes/bhicv.shx
spdep/inst/etc/shapes/boston_tracts.shx
spdep/inst/etc/shapes/eire.shx
spdep/inst/etc/shapes/sids.dbf
spdep/inst/etc/shapes/columbus.shx
spdep/inst/etc/shapes/NY8_utm18.shx
spdep/inst/etc/shapes/auckland.dbf
spdep/inst/etc/shapes/NY8_utm18.shp
spdep/inst/etc/shapes/bhicv.shp
spdep/inst/etc/shapes/boston_tracts.dbf
spdep/inst/etc/shapes/bhicv.dbf
spdep/inst/etc/shapes/boston_tracts.prj
spdep/inst/etc/shapes/columbus.shp
spdep/inst/etc/shapes/eire.shp
spdep/inst/etc/shapes/wheat.shx
spdep/inst/etc/shapes/sids.shx
spdep/inst/etc/shapes/boston_tracts.shp
spdep/inst/etc/shapes/wheat.shp
spdep/inst/etc/shapes/auckland.shx
spdep/inst/etc/shapes/sids.shp
spdep/inst/etc/shapes/NY8_utm18.dbf
spdep/inst/etc/shapes/wheat.dbf
spdep/inst/etc/shapes/eire.dbf
spdep/inst/etc/shapes/auckland.shp
spdep/inst/etc/shapes/NY8_utm18.prj
spdep/inst/etc/shapes/columbus.dbf
spdep/inst/etc/weights
spdep/inst/etc/weights/columbus.gal
spdep/inst/etc/weights/ncCC89.gal
spdep/inst/etc/weights/NY_nb.gal
spdep/inst/etc/weights/us48_rk.GAL
spdep/inst/etc/weights/us48_q.GAL
spdep/inst/etc/weights/us48.txt
spdep/inst/etc/weights/wmat.dat
spdep/inst/etc/weights/ncCR85.gal
spdep/inst/etc/weights/baltk4.GWT
spdep/inst/CHANGES
spdep/src
spdep/src/eminmaxC.c
spdep/src/Makevars
spdep/src/symtest.c
spdep/src/jc.c
spdep/src/dnn.c
spdep/src/listw2sn.c
spdep/src/gabriel.c
spdep/src/gsymtest.c
spdep/src/spdep.h
spdep/src/lagw.c
spdep/src/dfs_ncomp.c
spdep/src/skater.c
spdep/src/ml_sse.c
spdep/src/insiders.c
spdep/src/gearyw.c
spdep/src/card.c
spdep/src/knn.c
spdep/src/polypoly.c
spdep/src/init.c
spdep/src/nbdists.c
spdep/src/mom_calc.c
spdep/src/relative.c
spdep/src/listw2Matrix.c
spdep/NAMESPACE
spdep/data
spdep/data/hopkins.rda
spdep/data/NY_data.rda
spdep/data/boston.rda
spdep/data/baltimore.rda
spdep/data/wheat.rda
spdep/data/auckland.rda
spdep/data/elect80.rda
spdep/data/columbus.rda
spdep/data/used.cars.rda
spdep/data/datalist
spdep/data/eire.rda
spdep/data/oldcol.rda
spdep/data/huddersfield.rda
spdep/data/afcon.rda
spdep/data/nc.sids.rda
spdep/data/getisord.rda
spdep/data/house.RData
spdep/R
spdep/R/aple.mc.R
spdep/R/poly2nb.R
spdep/R/plot.skater.R
spdep/R/jacobian.R
spdep/R/read.gwt2nb.R
spdep/R/utils.R
spdep/R/jacobian_setup.R
spdep/R/lextrW.R
spdep/R/sarlm.R
spdep/R/mess.R
spdep/R/spBreg.R
spdep/R/listw2sn.R
spdep/R/sp.mantel.R
spdep/R/cyclical.R
spdep/R/apleplot.R
spdep/R/ME.R
spdep/R/spautolm.R
spdep/R/lag.spsarlm.R
spdep/R/error.hessian.R
spdep/R/lm.morantest.R
spdep/R/lee_internal.R
spdep/R/droplinks.R
spdep/R/geary.R
spdep/R/moran.plot.R
spdep/R/error.spsarlm.R
spdep/R/sp.correlogram.R
spdep/R/prunemst.R
spdep/R/impacts.R
spdep/R/p.adjustSP.R
spdep/R/mcmcsamp.R
spdep/R/SpatialFiltering.R
spdep/R/kpgm_new.R
spdep/R/eigenw.R
spdep/R/globalG.R
spdep/R/knearneigh.R
spdep/R/bptest.sarlm.R
spdep/R/nboperations.R
spdep/R/moran.R
spdep/R/s2sls.R
spdep/R/lee.R
spdep/R/aple.R
spdep/R/autocov.R
spdep/R/listw2Matrix.R
spdep/R/tri2nb.R
spdep/R/nb2mat.R
spdep/R/gabrielneigh.R
spdep/R/knn2nb.R
spdep/R/soi.R
spdep/R/nb2blocknb.R
spdep/R/mstree.R
spdep/R/card.R
spdep/R/components.R
spdep/R/moran.exact.R
spdep/R/mtlocalmoran.R
spdep/R/prunecost.R
spdep/R/dnearneigh.R
spdep/R/plot.mst.R
spdep/R/choynowski.R
spdep/R/localG.R
spdep/R/graph2nb.R
spdep/R/lee.mc.R
spdep/R/mtmoran.R
spdep/R/subset.nb.R
spdep/R/skater.R
spdep/R/sacsarlm.R
spdep/R/cellneighbours.R
spdep/R/spChkOption.R
spdep/R/LR.spsarlm.R
spdep/R/nb2lines.R
spdep/R/nblag.R
spdep/R/relneigh.R
spdep/R/localmoran.R
spdep/R/nbdists.R
spdep/R/EBI.R
spdep/R/summary.spsarlm.R
spdep/R/localmoran.exact.R
spdep/R/anova.sarlm.R
spdep/R/weights-utils.R
spdep/R/edit.nb.R
spdep/R/read.gal.R
spdep/R/lag.hessian.R
spdep/R/airdist.R
spdep/R/tolerance.nb.R
spdep/R/moran.exact.alt.R
spdep/R/lextrB.R
spdep/R/nbcosts.R
spdep/R/rotation.R
spdep/R/jc.R
spdep/R/summary.nb.R
spdep/R/lee.test.R
spdep/R/nb2listw.R
spdep/R/diffnb.R
spdep/R/lm.LMtests.R
spdep/R/AAA.R
spdep/R/plot.nb.R
spdep/vignettes
spdep/vignettes/SpatialFiltering.Rnw
spdep/vignettes/sids.Rnw
spdep/vignettes/nb.Rnw
spdep/vignettes/nb_igraph.Rmd
spdep/vignettes/CO69.Rnw
spdep/MD5
spdep/build
spdep/build/vignette.rds
spdep/DESCRIPTION
spdep/ChangeLog
spdep/man
spdep/man/trW.Rd
spdep/man/summary.sarlm.Rd
spdep/man/nbdists.Rd
spdep/man/tolerance.nb.Rd
spdep/man/geary.test.Rd
spdep/man/predict.sarlm.Rd
spdep/man/autocov_dist.Rd
spdep/man/as_dgRMatrix_listw.Rd
spdep/man/hopkins.Rd
spdep/man/house.Rd
spdep/man/include.self.Rd
spdep/man/plot.mst.Rd
spdep/man/airdist.Rd
spdep/man/localmoran.sad.Rd
spdep/man/nb2lines.Rd
spdep/man/mstree.Rd
spdep/man/plot.nb.Rd
spdep/man/skater.Rd
spdep/man/knearneigh.Rd
spdep/man/joincount.mc.Rd
spdep/man/prunemst.Rd
spdep/man/knn2nb.Rd
spdep/man/aple.plot.Rd
spdep/man/testnb.Rd
spdep/man/nb2blocknb.Rd
spdep/man/auckland.Rd
spdep/man/nbcosts.Rd
spdep/man/nb2WB.Rd
spdep/man/MCMCsamp.Rd
spdep/man/moran.mc.Rd
spdep/man/geary.Rd
spdep/man/moran.Rd
spdep/man/wheat.Rd
spdep/man/joincount.multi.Rd
spdep/man/used.cars.Rd
spdep/man/mat2listw.Rd
spdep/man/localG.Rd
spdep/man/errorsarlm.Rd
spdep/man/p.adjustSP.Rd
spdep/man/huddersfield.Rd
spdep/man/aple.Rd
spdep/man/subset.nb.Rd
spdep/man/read.gal.Rd
spdep/man/choynowski.Rd
spdep/man/geary.mc.Rd
spdep/man/impacts.sarlm.Rd
spdep/man/moran.test.Rd
spdep/man/lee.test.Rd
spdep/man/sp.mantel.mc.Rd
spdep/man/globalG.test.Rd
spdep/man/spweights.constants.Rd
spdep/man/do_ldet.Rd
spdep/man/afcon.Rd
spdep/man/moran.plot.Rd
spdep/man/stsls.Rd
spdep/man/lee.mc.Rd
spdep/man/droplinks.Rd
spdep/man/spdep.Rd
spdep/man/elect80.Rd
spdep/man/set.spChkOption.Rd
spdep/man/sp.correlogram.Rd
spdep/man/nb2INLA.Rd
spdep/man/probmap.Rd
spdep/man/diffnb.Rd
spdep/man/LR.sarlm.Rd
spdep/man/aple.mc.Rd
spdep/man/lm.morantest.sad.Rd
spdep/man/joincount.test.Rd
spdep/man/boston.Rd
spdep/man/similar.listw.Rd
spdep/man/EBImoran.mc.Rd
spdep/man/write.nb.gal.Rd
spdep/man/ME.Rd
spdep/man/EBest.Rd
spdep/man/listw2sn.Rd
spdep/man/spautolm.Rd
spdep/man/subset.listw.Rd
spdep/man/eigenw.Rd
spdep/man/prunecost.Rd
spdep/man/baltimore.Rd
spdep/man/lag.listw.Rd
spdep/man/summary.nb.Rd
spdep/man/cell2nb.Rd
spdep/man/lagsarlm.Rd
spdep/man/residuals.sarlm.Rd
spdep/man/getisord.Rd
spdep/man/lm.morantest.Rd
spdep/man/graphneigh.Rd
spdep/man/bptest.sarlm.Rd
spdep/man/lagmess.Rd
spdep/man/aggregate.nb.Rd
spdep/man/gstsls.Rd
spdep/man/edit.nb.Rd
spdep/man/compon.Rd
spdep/man/lm.morantest.exact.Rd
spdep/man/poly2nb.Rd
spdep/man/nboperations.Rd
spdep/man/dnearneigh.Rd
spdep/man/nb2listw.Rd
spdep/man/lextrB.Rd
spdep/man/nc.sids.Rd
spdep/man/ssw.Rd
spdep/man/columbus.Rd
spdep/man/bhicv.Rd
spdep/man/rotation.Rd
spdep/man/read.gwt2nb.Rd
spdep/man/lm.LMtests.Rd
spdep/man/GMerrorsar.Rd
spdep/man/localmoran.Rd
spdep/man/COL.OLD.Rd
spdep/man/localmoran.exact.Rd
spdep/man/EBlocal.Rd
spdep/man/eire.Rd
spdep/man/lee.Rd
spdep/man/plot.skater.Rd
spdep/man/card.Rd
spdep/man/sacsarlm.Rd
spdep/man/invIrM.Rd
spdep/man/anova.sarlm.Rd
spdep/man/SpatialFiltering.Rd
spdep/man/set.mcOption.Rd
spdep/man/nblag.Rd
spdep/man/NY_data.Rd
spdep/man/tri2nb.Rd
spdep/man/nb2mat.Rd