get_paths_with_cpds_org: Get only the paths of the organism that contain given...

In specmine: Metabolomics and Spectral Data Analysis and Mining

Get only the paths of the organism that contain given compounds:

Description

Get only the paths of the organism that contain given compounds:

Usage

get_paths_with_cpds_org(organism_code, compounds, full.result = TRUE)

Arguments

organism_code	TODO.
compounds	TODO.
full.result	TODO.

Value

A data.frame with the pathways containing the input compounds. Each row represents one matched pathway. When full.result = TRUE, the returned data frame includes the columns pathways, ratio, compounds, and compounds_names; otherwise it contains only pathways and ratio. Row names correspond to pathway names.

Examples

## Not run: 
cpds <- c(glucose = "cpd:C00031", pyruvate = "cpd:C00022")
head(get_paths_with_cpds_org("hsa", cpds, full.result = FALSE))

## End(Not run)

specmine documentation built on Aug. 5, 2026, 5:06 p.m.