Files in specmine
Metabolomics and Spectral Data Analysis and Mining

NAMESPACE
data
data/propolisSampleList.rda
data/spinalCord.rda
data/cachexia.rda
data/propolis.rda
data/cassavaPPD.rda
data/datalist
R
R/preprocessing.R R/utils.R R/pca.R R/filter_dataset.R R/structure.R R/graphics.R R/regression.R R/read_spc.R R/filters_flat.R R/normalization.R R/feature_selection.R R/reading_data.R R/peaklists.R R/convert_chemospec.R R/machinelearning.R R/mzmatch_metabolite_identification.R R/ms_functions.R R/init.R R/missing_values.R R/clustering.R R/read.spc.modified.R R/stats.R R/convert_hyperspec.R R/univariate.R R/MAIT_metabolite_identification.R R/read_dx.R R/peak_alignment.R R/data_integration.R
MD5
DESCRIPTION
man
man/plot_anova.Rd man/get_value_label.Rd man/remove_metadata_variables.Rd man/fold_change.Rd man/impute_nas_mean.Rd man/kmeans_plot.Rd man/pca_pairs_kmeans_plot.Rd man/pca_screeplot.Rd man/impute_nas_value.Rd man/scaling_samples.Rd man/normalize_samples.Rd man/low_level_fusion.Rd man/get_metadata_var.Rd man/read_dataset_dx.Rd man/apply_by_sample.Rd man/scaling.Rd man/get_type.Rd man/values_per_peak.Rd man/train_models_performance.Rd man/set_x_label.Rd man/remove_variables_by_nas.Rd man/get_sample_names.Rd man/linreg_pvalue_table.Rd man/x_values_to_indexes.Rd man/remove_samples_by_nas.Rd man/plot_kstest.Rd man/set_x_values.Rd man/read_dataset_spc.Rd man/plot_ttests.Rd man/count_missing_values_per_variable.Rd man/convert_from_hyperspec.Rd man/apply_by_group.Rd man/impute_nas_knn.Rd man/first_derivative.Rd man/multifactor_aov_all_vars.Rd man/convert_from_chemospec.Rd man/read_data_csv.Rd man/background_correction.Rd man/merge_data_metadata.Rd man/pca_biplot.Rd man/missingvalues_imputation.Rd man/multifactor_aov_varexp_table.Rd man/ksTest_dataset.Rd man/plot_fold_change.Rd man/compare_regions_by_sample.Rd man/peaks_per_sample.Rd man/convert_to_hyperspec.Rd man/get_samples_names_dx.Rd man/hierarchical_clustering.Rd man/absorbance_to_transmittance.Rd man/cubic_root_transform.Rd man/pca_scoresplot3D_rgl.Rd man/get_data_as_df.Rd man/remove_data_variables.Rd man/pca_scoresplot2D.Rd man/savitzky_golay.Rd man/transmittance_to_absorbance.Rd man/tTests_dataset.Rd man/dataset_from_peaks.Rd man/kmeans_clustering.Rd man/subset_x_values_by_interval.Rd man/transform_data.Rd man/plot_spectra.Rd man/sum_dataset.Rd man/data_correction.Rd man/dendrogram_plot.Rd man/values_per_sample.Rd man/convert_to_factor.Rd man/predict_samples.Rd man/kruskalTest_dataset.Rd man/read_csvs_folder.Rd man/remove_peaks_interval_sample_list.Rd man/multiClassSummary.Rd man/correlations_test.Rd man/check_dataset.Rd man/get_data_values.Rd man/aggregate_samples.Rd man/fold_change_var.Rd man/volcano_plot_fc_tt.Rd man/clustering.Rd man/apply_by_groups.Rd man/snv_dataset.Rd man/pca_kmeans_plot3D.Rd man/set_value_label.Rd man/linreg_coef_table.Rd man/kmeans_result_df.Rd man/plot_spectra_simple.Rd man/set_metadata.Rd man/read_ms_spectra.Rd man/spinalCord.Rd man/replace_metadata_value.Rd man/count_missing_values.Rd man/remove_samples.Rd man/linreg_rsquared.Rd man/read_multiple_csvs.Rd man/propolis.Rd man/cachexia.Rd man/boxplot_vars_factor.Rd man/pca_pairs_plot.Rd man/set_sample_names.Rd man/get_metadata.Rd man/mean_centering.Rd man/count_missing_values_per_sample.Rd man/pca_robust.Rd man/get_data_value.Rd man/heatmap_correlations.Rd man/plot_kruskaltest.Rd man/get_x_label.Rd man/merge_datasets.Rd man/aov_all_vars.Rd man/read_metadata.Rd man/find_equal_samples.Rd man/offset_correction.Rd man/get_data.Rd man/read_data_spc.Rd man/multiplot.Rd man/subset_random_samples.Rd man/remove_samples_by_na_metadata.Rd man/subset_by_samples_and_xvalues.Rd man/group_peaks.Rd man/feature_selection.Rd man/multifactor_aov_pvalues_table.Rd man/recursive_feature_elimination.Rd man/linregression_onevar.Rd man/dendrogram_plot_col.Rd man/remove_peaks_interval.Rd man/shift_correction.Rd man/subset_samples_by_metadata_values.Rd man/metadata_as_variables.Rd man/peaks_per_samples.Rd man/correlation_test.Rd man/filter_feature_selection.Rd man/num_samples.Rd man/msc_correction.Rd man/correlations_dataset.Rd man/baseline_correction.Rd man/xvalue_interval_to_indexes.Rd man/subset_x_values.Rd man/log_transform.Rd man/variables_as_metadata.Rd man/is_spectra.Rd man/normalize.Rd man/train_and_predict.Rd man/pca_kmeans_plot2D.Rd man/summary_var_importance.Rd man/pca_plot_3d.Rd man/read_dataset_csv.Rd man/impute_nas_median.Rd man/stats_by_sample.Rd man/read_data_dx.Rd man/subset_metadata.Rd man/pca_importance.Rd man/get_metadata_value.Rd man/indexes_to_xvalue_interval.Rd man/smoothing_interpolation.Rd man/train_classifier.Rd man/get_peak_values.Rd man/boxplot_variables.Rd man/plot_regression_coefs_pvalues.Rd man/subset_samples.Rd man/pca_analysis_dataset.Rd man/get_x_values_as_text.Rd man/create_dataset.Rd man/remove_x_values_by_interval.Rd man/pca_biplot3D.Rd man/num_x_values.Rd man/flat_pattern_filter.Rd man/cassavaPPD.Rd man/remove_data.Rd man/plotvar_twofactor.Rd man/apply_by_variable.Rd man/impute_nas_linapprox.Rd man/replace_data_value.Rd man/get_samples_names_spc.Rd man/MAIT_identify_metabolites.Rd man/stats_by_variable.Rd man/pca_scoresplot3D.Rd man/linreg_all_vars.Rd man/propolisSampleList.Rd man/get_x_values_as_num.Rd
specmine documentation built on May 29, 2017, 3 p.m.