Description Usage Arguments Examples
Groups the points with the clusters given by k-means in a interactive 3D PCA scores plot.
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dataset |
list representing the dataset from a metabolomics experiment. |
pca.result |
prcomp object with the PCA results. |
num.clusters |
number of clusters of k-means. |
pcas |
vector with the principal components to be plotted. |
kmeans.result |
result from k-means. If null k-means is performed in the function. |
labels |
boolean value indicating if the samples' labels will be shown. |
size |
parameter of plot3d from rgl package. |
... |
additional parameters of plot3d function from rgl package. |
1 2 3 4 5 6 7 | ### Example of a 3D PCA k-means plot
library(specmine.datasets)
data(cachexia)
pca.result = pca_analysis_dataset(cachexia)
pca_kmeans_plot3D(cachexia, pca.result, num.clusters = 3,
pcas = c(1,2,3))
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