get_OrganismsCodes: Get code, t number, full name and phylogeny of all organisms...
In specmine: Metabolomics and Spectral Data Analysis and Mining
View source: R/PATHWAY_ANALYSIS.R
get_OrganismsCodes R Documentation
Get code, t number, full name and phylogeny of all organisms in KEGG:
Description
Get code, t number, full name and phylogeny of all organisms in KEGG:
Usage
get_OrganismsCodes()
Value
A data.frame with the KEGG T number, organism code, species
names, and phylogeny for all organisms available in KEGG. Each row
represents one organism and the columns are Tnumber,
organismCode, speciesNames, and phylogeny.
Examples
## Not run:
head(get_OrganismsCodes())
## End(Not run)
specmine documentation built on Aug. 5, 2026, 5:06 p.m.
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View source: R/PATHWAY_ANALYSIS.R
| get_OrganismsCodes | R Documentation |
Get code, t number, full name and phylogeny of all organisms in KEGG:
Description
Get code, t number, full name and phylogeny of all organisms in KEGG:
Usage
get_OrganismsCodes()
Value
A data.frame with the KEGG T number, organism code, species
names, and phylogeny for all organisms available in KEGG. Each row
represents one organism and the columns are Tnumber,
organismCode, speciesNames, and phylogeny.
Examples
## Not run:
head(get_OrganismsCodes())
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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