maf: Minor Allele Frequencies
In strataG: Summaries and Population Structure Analyses of Genetic Data

Description Usage Arguments Value Author(s) See Also Examples

Calculate minor allele frequencies for each locus.

1	maf(g, by.strata = FALSE, maf.within = FALSE)

`g`	a gtypes object.
`by.strata`	logical - return results grouped by strata?
`maf.within`	if `by.strata = TRUE`, identify minor allele within each strata independently? If `FALSE` minor allele is identified from all individuals.

A vector or matrix of minor allele frequencies at each locus.

Eric Archer eric.archer@noaa.gov

alleleFreqs

data(msats.g)

maf(msats.g)

# minor allele identified from all indivudals
maf(msats.g, by.strata = TRUE)

# minor allele identified within each strata
maf(msats.g, by.strata = TRUE, maf.within = TRUE)