fixedSites: Fixed Sites
In strataG: Summaries and Population Structure Analyses of Genetic Data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Identify fixed sites among sequences.
Usage
1
fixedSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
Arguments
x
a gtypes object with sequences, a list of sequences, or a consensus sequence.
Sequences must be aligned.
bases
a character vector of valid bases to consider.
simplify
if there is a single locus, return result in a simplified
form? If FALSE a list will be returned wth one element per locus.
Value
a vector of fixed sites. Element names are site positions in the
original sequence.
Author(s)
Eric Archer <eric.archer@noaa.gov>
See Also
Examples
1
2
3
strataG documentation built on Feb. 28, 2020, 9:07 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Identify fixed sites among sequences.
Usage
1 | fixedSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
|
Arguments
x |
a |
bases |
a character vector of valid bases to consider. |
simplify |
if there is a single locus, return result in a simplified
form? If |
Value
a vector of fixed sites. Element names are site positions in the original sequence.
Author(s)
Eric Archer <eric.archer@noaa.gov>
See Also
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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