variableSites: Variable Sites
In strataG: Summaries and Population Structure Analyses of Genetic Data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/variableSites.R
Description
Identify variable sites among sequences.
Usage
1
variableSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
Arguments
x
a gtypes object with sequences,
a DNAbin object, or a list of sequences.
bases
character vector of bases to consider.
simplify
if there is a single locus, return result in a simplified
form? If FALSE a list will be returned wth one element per locus.
Value
A list with:
- site
a DNAbin object composed of variable sites.
- site.freqs
a matrix of base pair frequencies by site.
Author(s)
Eric Archer eric.archer@noaa.gov
See Also
Examples
1
2
3
strataG documentation built on Feb. 28, 2020, 9:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
View source: R/variableSites.R
Description
Identify variable sites among sequences.
Usage
1 | variableSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
|
Arguments
x |
a gtypes object with sequences,
a |
bases |
character vector of bases to consider. |
simplify |
if there is a single locus, return result in a simplified
form? If |
Value
A list with:
- site
a
DNAbinobject composed of variable sites.- site.freqs
a matrix of base pair frequencies by site.
Author(s)
Eric Archer eric.archer@noaa.gov
See Also
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.