tests/testthat/test_update_each_effect.R

context("test_update_each_effect.R")

test_that("update_each_effect agrees with version 0.3", with(simulate(sparse=T), {
  original.res = readRDS('vbupdate_original_res.rds')
  original.res$Xr = as.vector(original.res$Xr)
  scaledX = set_X_attributes(X)
  scaledX.sparse = set_X_attributes(X.sparse)

  dense.res = update_each_effect(scaledX,y,s)
  sparse.res = update_each_effect(scaledX.sparse,y,s)

  expect_equal_susie_update(sparse.res, original.res)
  expect_equal_susie_update(dense.res, original.res)
}))

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susieR documentation built on March 7, 2023, 6:11 p.m.