Nothing
tcgsaseq
R packagevarseq()
function into varcompseq
(following trademark infringement notification from Golden Helix, Inc)tcgsaseq
in favor of the dearseq
Bioconductor packagetransform = TRUE
is now the defaultloc-lin
weights are now computed on unconditional (transformed) counts. They should be more robust this way to outlier genesvoom
-like weights$pvals
output are back to being the same regardless of the test
chosen being asympotic
or permutation
$pvals
output when which_test = permutations
preprocessed = FALSE
) in sp_weights
sp_weights
when facing NA
or NaN
valuesWARNING
instead of ERROR
when a gene set with no measured genes is testedNA
support through na.rm_...
logical argumentspreprocessed = FALSE
)varseq
and tcgsa_seq
wrapper functions, including
an option to compute heteroscedasticity weights without conditioning on the variable(s)
to be testedvarseq
for gene-wise testingAny scripts or data that you put into this service are public.
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