Nothing
# grid version of pointLabel
plot_text_pointLabelGrid <- function (x, y, width, height,
method = c("SANN", "GA"),
allowSmallOverlap = FALSE, trace = FALSE, xyAspect=1, ...)
{
#labels <- as.graphicsAnnot(labels)
boundary <- c(0, 1, 0, 1) #par()$usr
#xyAspect <- par()$pin[1]/par()$pin[2]
toUnityCoords <- function(xy) {
list(x = (xy$x - boundary[1])/(boundary[2] - boundary[1]) *
xyAspect, y = (xy$y - boundary[3])/(boundary[4] -
boundary[3])/xyAspect)
}
toUserCoords <- function(xy) {
list(x = boundary[1] + xy$x/xyAspect * (boundary[2] -
boundary[1]), y = boundary[3] + xy$y * xyAspect *
(boundary[4] - boundary[3]))
}
z <- xy.coords(x, y, recycle = TRUE)
z <- toUnityCoords(z)
x <- z$x
y <- z$y
method <- match.arg(method)
if (allowSmallOverlap)
nudgeFactor <- 0.02
n_labels <- length(x)
#width <- (strwidth(labels, units = "figure", cex = cex) + 0.015) * xyAspect
#height <- (strheight(labels, units = "figure", cex = cex) + 0.015)/xyAspect
gen_offset <- function(code) c(-1, -1, -1, 0, 0, 1, 1, 1)[code] *
(width/2) + (0+1i) * c(-1, 0, 1, -1, 1, -1, 0, 1)[code] *
(height/2)
rect_intersect <- function(xy1, offset1, xy2, offset2) {
w <- pmin(Re(xy1 + offset1/2), Re(xy2 + offset2/2)) -
pmax(Re(xy1 - offset1/2), Re(xy2 - offset2/2))
h <- pmin(Im(xy1 + offset1/2), Im(xy2 + offset2/2)) -
pmax(Im(xy1 - offset1/2), Im(xy2 - offset2/2))
w[w <= 0] <- 0
h[h <= 0] <- 0
w * h
}
nudge <- function(offset) {
doesIntersect <- rect_intersect(xy[rectidx1] + offset[rectidx1],
rectv[rectidx1], xy[rectidx2] + offset[rectidx2],
rectv[rectidx2]) > 0
pyth <- abs(xy[rectidx1] + offset[rectidx1] - xy[rectidx2] -
offset[rectidx2])/nudgeFactor
eps <- 1e-10
for (i in which(doesIntersect & pyth > eps)) {
idx1 <- rectidx1[i]
idx2 <- rectidx2[i]
vect <- (xy[idx1] + offset[idx1] - xy[idx2] - offset[idx2])/pyth[idx1]
offset[idx1] <- offset[idx1] + vect
offset[idx2] <- offset[idx2] - vect
}
offset
}
objective <- function(gene) {
offset <- gen_offset(gene)
if (allowSmallOverlap)
offset <- nudge(offset)
if (!is.null(rectidx1))
area <- sum(rect_intersect(xy[rectidx1] + offset[rectidx1],
rectv[rectidx1], xy[rectidx2] + offset[rectidx2],
rectv[rectidx2]))
else area <- 0
n_outside <- sum(Re(xy + offset - rectv/2) < 0 | Re(xy +
offset + rectv/2) > xyAspect | Im(xy + offset - rectv/2) <
0 | Im(xy + offset + rectv/2) > 1/xyAspect)
res <- 1000 * area + n_outside
res
}
xy <- x + (0+1i) * y
rectv <- width + (0+1i) * height
rectidx1 <- rectidx2 <- array(0, (length(x)^2 - length(x))/2)
k <- 0
for (i in 1:length(x)) for (j in seq(len = (i - 1))) {
k <- k + 1
rectidx1[k] <- i
rectidx2[k] <- j
}
canIntersect <- rect_intersect(xy[rectidx1], 2 * rectv[rectidx1],
xy[rectidx2], 2 * rectv[rectidx2]) > 0
rectidx1 <- rectidx1[canIntersect]
rectidx2 <- rectidx2[canIntersect]
if (trace)
cat("possible intersects =", length(rectidx1), "\n")
if (trace)
cat("portion covered =", sum(rect_intersect(xy, rectv,
xy, rectv)), "\n")
GA <- function() {
n_startgenes <- 1000
n_bestgenes <- 30
prob <- 0.2
mutate <- function(gene) {
offset <- gen_offset(gene)
doesIntersect <- rect_intersect(xy[rectidx1] + offset[rectidx1],
rectv[rectidx1], xy[rectidx2] + offset[rectidx2],
rectv[rectidx2]) > 0
for (i in which(doesIntersect)) {
gene[rectidx1[i]] <- sample(1:8, 1)
}
for (i in seq(along = gene)) if (runif(1) <= prob)
gene[i] <- sample(1:8, 1)
gene
}
crossbreed <- function(g1, g2) ifelse(sample(c(0, 1),
length(g1), replace = TRUE) > 0.5, g1, g2)
genes <- matrix(sample(1:8, n_labels * n_startgenes,
replace = TRUE), n_startgenes, n_labels)
for (i in 1:10) {
scores <- array(0, NROW(genes))
for (j in 1:NROW(genes)) scores[j] <- objective(genes[j,
])
rankings <- order(scores)
genes <- genes[rankings, ]
bestgenes <- genes[1:n_bestgenes, ]
bestscore <- scores[rankings][1]
if (bestscore == 0) {
if (trace)
cat("overlap area =", bestscore, "\n")
break
}
genes <- matrix(0, n_bestgenes^2, n_labels)
for (j in 1:n_bestgenes) for (k in 1:n_bestgenes) genes[n_bestgenes *
(j - 1) + k, ] <- mutate(crossbreed(bestgenes[j,
], bestgenes[k, ]))
genes <- rbind(bestgenes, genes)
if (trace)
cat("overlap area =", bestscore, "\n")
}
nx <- Re(xy + gen_offset(bestgenes[1, ]))
ny <- Im(xy + gen_offset(bestgenes[1, ]))
list(x = nx, y = ny)
}
SANN <- function() {
gene <- rep(8, n_labels)
score <- objective(gene)
bestgene <- gene
bestscore <- score
T <- 2.5
for (i in 1:50) {
k <- 1
for (j in 1:50) {
newgene <- gene
newgene[sample(1:n_labels, 1)] <- sample(1:8,
1)
newscore <- objective(newgene)
if (newscore <= score || runif(1) < exp((score -
newscore)/T)) {
k <- k + 1
score <- newscore
gene <- newgene
}
if (score <= bestscore) {
bestscore <- score
bestgene <- gene
}
if (bestscore == 0 || k == 10)
break
}
if (bestscore == 0)
break
if (trace)
cat("overlap area =", bestscore, "\n")
T <- 0.9 * T
}
if (trace)
cat("overlap area =", bestscore, "\n")
nx <- Re(xy + gen_offset(bestgene))
ny <- Im(xy + gen_offset(bestgene))
list(x = nx, y = ny)
}
if (method == "SANN")
xy <- SANN()
else xy <- GA()
xy <- toUserCoords(xy)
invisible(xy)
}
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