birds: Phylogenetic tree of Aves

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Jetz et al. (2012)'s Avian supertree augmented with taxonomic information generated from the NCBI taxonomy. Here used for testing and demonstrating treeman functions. See R script to see how the tree was generate: https://github.com/DomBennett/treeman/blob/master/other/generate_tree_data.R.

Usage

   data(birds)

Format

birds is a TreeMan object

Source

Jetz, W., Thomas, G.H., Joy, J.B., Hartmann, K. and Mooers, A.O. 2012. The global diversity of birds in space and time. Nature, 491: 444-448

Examples

data(birds) # load object
summary(birds)

Example output

Tree (TreeMan Object):
  + 9993 tips
  + 9992 internal nodes
  + With taxonomic names
  + Binary
  + PD 81200
  + Root node is "n19986"

treeman documentation built on July 8, 2020, 7:28 p.m.