getSpnAge: Get age range

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Return start and end ages for id from when it first appears to when it splits

Usage

getSpnAge(tree, id, tree_age)

Arguments

tree	TreeMan object
id	node id
tree_age	numeric value of known age of tree

Details

Returns a dataframe.

See Also

getNdAge, getNdsAge, getSpnsAge, https://github.com/DomBennett/treeman/wiki/get-methods

Examples

library(treeman)
data(mammals)
# mammal_age <- getAge(mammals)  # ~166.2, needs to be performed when tree is not up-to-date
getSpnAge(mammals, id='Homo_sapiens', tree_age=166.2)

Example output

           spn start end
1 Homo_sapiens   9.7   0

treeman documentation built on July 8, 2020, 7:28 p.m.