API for treeman
Phylogenetic Tree Manipulation Class and Methods
| Global functions | |
|---|---|
| .cMenToAny | Source code |
| .cMenToMan | Source code |
| .cMenToMen | Source code |
| .cTreeObjs | Source code |
| .cnstrctTree | Source code |
| .findClade | Source code |
| .getNdKidsFrmLst | Source code |
| .getNdPDFrmLst | Source code |
| .getNdPrdstsFrmLst | Source code |
| .getNdPridsFrmLst | Source code |
| .getNdPtidsFrmLst | Source code |
| .getNdSstrFrmLst | Source code |
| .getNdmtrxFrmLst | Source code |
| .getNdsKidsFrmLst | Source code |
| .getNdsKidsFrmMtrx | Source code |
| .getNdsPDFrmLst | Source code |
| .getNdsPDFrmMtrx | Source code |
| .getNdsPrdstsFrmLst | Source code |
| .getNdsPrdstsFrmMtrx | Source code |
| .getNdsPridsFrmLst | Source code |
| .getNdsPridsFrmMtrx | Source code |
| .getNdsPtidsFrmLst | Source code |
| .getNdsPtidsFrmMtrx | Source code |
| .getPrinds | Source code |
| .getSltSpns | Source code |
| .getTinds | Source code |
| .getTreeAgeFrmLst | Source code |
| .getTreeAgeFrmMtrx | Source code |
| .livingOrDesceased | Source code |
| .newNd | Source code |
| .preCtest | Source code |
| .readTree | Source code |
| .readTrmn | Source code |
| .writeTree | Source code |
| Extract | Man page |
| Node-class | Man page |
| Node-method | Man page |
| TreeMan-class | Man page |
| TreeMan-method | Man page |
| TreeMan-to-phylo | Man page |
| TreeMen-class | Man page |
| TreeMen-method | Man page |
| TreeMen-to-multiPhylo | Man page |
| [,Node,character,missing,missing-method | Man page |
| [,TreeMan,character,missing,missing-method | Man page |
| [,TreeMen,character,missing,missing-method | Man page |
| [[,TreeMan,character-method | Man page |
| [[,TreeMen,ANY-method | Man page |
| a | Man page |
| addClade | Man page Source code |
| addNdmtrx | Man page Source code |
| addTip | Man page Source code |
| as.character,Node-method | Man page |
| as.character,TreeMan-method | Man page |
| as.character,TreeMen-method | Man page |
| birds | Man page |
| blncdTree | Man page Source code |
| cTrees | Man page |
| cTrees,TreeMan-method | Man page |
| cTrees,TreeMen-method | Man page |
| calcDstBLD | Man page Source code |
| calcDstMtrx | Man page Source code |
| calcDstRF | Man page Source code |
| calcDstTrp | Man page Source code |
| calcFrPrp | Man page Source code |
| calcNdBlnc | Man page Source code |
| calcNdsBlnc | Man page Source code |
| calcOvrlp | Man page Source code |
| calcPhyDv | Man page Source code |
| calcPrtFrPrp | Man page Source code |
| checkNdlst | Man page Source code |
| checkTreeMen | Man page Source code |
| fastCheckTreeMan | Man page Source code |
| from | Man page |
| getAge | Man page Source code |
| getBiprts | Man page Source code |
| getCnnctdNds | Man page Source code |
| getDcsd | Man page Source code |
| getLvng | Man page Source code |
| getNdAge | Man page Source code |
| getNdKids | Man page Source code |
| getNdLng | Man page Source code |
| getNdPD | Man page Source code |
| getNdPrdst | Man page Source code |
| getNdPrids | Man page Source code |
| getNdPtids | Man page Source code |
| getNdSlt | Man page Source code |
| getNdSstr | Man page Source code |
| getNdsAge | Man page Source code |
| getNdsFrmTxnyms | Man page Source code |
| getNdsKids | Man page Source code |
| getNdsLng | Man page Source code |
| getNdsPD | Man page Source code |
| getNdsPrdst | Man page Source code |
| getNdsPrids | Man page Source code |
| getNdsPtids | Man page Source code |
| getNdsSlt | Man page Source code |
| getNdsSstr | Man page Source code |
| getOtgrp | Man page Source code |
| getPath | Man page Source code |
| getPrnt | Man page Source code |
| getSpnAge | Man page Source code |
| getSpnsAge | Man page Source code |
| getSubtree | Man page Source code |
| getUnqNds | Man page Source code |
| isUltrmtrc | Man page Source code |
| list | Man page |
| list-to-TreeMen | Man page |
| loadTreeMan | Man page Source code |
| mammals | Man page |
| multiPhylo | Man page |
| multiPhylo-class | Man page |
| multiPhylo-to-TreeMen | Man page |
| of | Man page |
| phylo | Man page |
| phylo-class | Man page |
| phylo-to-TreeMan | Man page |
| pinTips | Man page Source code |
| plants | Man page |
| print,Node-method | Man page |
| print,TreeMan-method | Man page |
| print,TreeMen-method | Man page |
| pstMnp | Man page Source code |
| randTree | Man page Source code |
| readTree | Man page Source code |
| readTrmn | Man page Source code |
| rmClade | Man page Source code |
| rmNdmtrx | Man page Source code |
| rmNodes | Man page Source code |
| rmOtherSlt | Man page Source code |
| rmTips | Man page Source code |
| saveTreeMan | Man page Source code |
| searchTxnyms | Man page |
| setAge | Man page |
| setNdID | Man page Source code |
| setNdOther | Man page Source code |
| setNdSpn | Man page Source code |
| setNdsID | Man page Source code |
| setNdsOther | Man page Source code |
| setNdsSpn | Man page Source code |
| setPD | Man page Source code |
| setTxnyms | Man page Source code |
| show,Node-method | Man page |
| show,TreeMan-method | Man page |
| show,TreeMen-method | Man page |
| slots | Man page |
| str,TreeMan-method | Man page |
| str,TreeMen-method | Man page |
| summary,Node-method | Man page |
| summary,TreeMan-method | Man page |
| summary,TreeMen-method | Man page |
| taxaResolve | Man page |
| treeman | Man page |
| treeman-package | Man page |
| trees | Man page |
| twoer | Man page Source code |
| ultrTree | Man page Source code |
| unblncdTree | Man page Source code |
| updateSlts | Man page Source code |
| writeTree | Man page Source code |
| writeTrmn | Man page Source code |
