getSpnsAge: Get age ranges for multiple nodes

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Return start and end ages for ids from when they first appear to when they split

Usage

getSpnsAge(tree, ids, tree_age, parallel = FALSE, progress = "none")

Arguments

tree	TreeMan object
ids	vector of node ids
tree_age	numeric value of known age of tree
parallel	logical, make parallel?
progress	name of the progress bar to use, see create_progress_bar

Details

Returns a dataframe, parallelizable.

See Also

getNdAge, getNdsAge, getSpnAge, https://github.com/DomBennett/treeman/wiki/get-methods

Examples

library(treeman)
tree <- randTree(10)
# all nodes but root
ids <- tree['nds'][tree['nds'] != tree['root']]
getSpnsAge(tree, ids=ids, tree_age=getAge(tree))

treeman documentation built on July 8, 2020, 7:28 p.m.