Description Usage Arguments Details References See Also Examples
Returns the evolutationary distinctness of ids using the fair proportion metric.
1 | calcFrPrp(tree, tids, progress = "none")
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tree |
|
tids |
tip IDs |
progress |
name of the progress bar to use, see |
The fair proportion metric calculates the evolutionary distinctness of tips in a tree through summing the total amount of branch length each tip represents, where each branch in the tree is evenly divided between all descendants. Parallelizable.
Isaac, N.J.B., Turvey, S.T., Collen, B., Waterman, C. and Baillie, J.E.M. (2007). Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.
calcPhyDv
, calcPrtFrPrp
,
https://github.com/DomBennett/treeman/wiki/calc-methods
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