Description Usage Arguments Details References See Also Examples
Returns the evolutationary distinctness of ids using the fair proportion metric.
1 | calcPrtFrPrp(tree, tids, ignr = NULL, progress = "none")
|
tree |
|
tids |
tip IDs |
ignr |
tips to ignore in calculation |
progress |
name of the progress bar to use, see |
Extension of calcFrPrp()
but with ignore argument.
Use ignr
to ignore certain tips from calculation. For example, if any of tips
are extinct you may wish to ignore these.
Isaac, N.J.B., Turvey, S.T., Collen, B., Waterman, C. and Baillie, J.E.M. (2007). Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.
calcFrPrp
https://github.com/DomBennett/treeman/wiki/calc-methods
1 2 3 | library(treeman)
tree <- randTree(10)
calcPrtFrPrp(tree, c('t1','t3'), ignr='t2')
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