plants: Phylogenetic tree of European Flora

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Durka and Michalski (2012)'s large phylogenetic tree of European vascular plants augmented with taxonomic information generated from the NCBI taxonomy. Here used for testing and demonstrating treeman functions. See R script to see how the tree was generate: https://github.com/DomBennett/treeman/blob/master/other/generate_tree_data.R.

Usage

data(plants)

Format

plants is a TreeMan object

Source

Durka, W. and Michalski, S.G. 2012. Daphne: a dated phylogeny of a large European flora for phylogenetically informed ecological analyses. Ecology 93:2297-2297.

Examples

data(plants) # load object
summary(plants)

Example output

Tree (TreeMan Object):
  + 5122 tips
  + 3345 internal nodes
  + With taxonomic names
  + Polytomous
  + PD 112000
  + Root node is "n8468"

treeman documentation built on July 8, 2020, 7:28 p.m.