setNdsSpn: Set the branch lengths of specific nodes

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Return a tree with the spans of nodes altered.

Usage

setNdsSpn(tree, ids, vals, parallel = FALSE, progress = "none")

Arguments

tree	TreeMan object
ids	ids of nodes whose preceding edges are to be changed
vals	new spans
parallel	logical, make parallel?
progress	name of the progress bar to use, see create_progress_bar

Details

Runs setNdSpn over multiple nodes. Parallelizable.

See Also

setNdSpn https://github.com/DomBennett/treeman/wiki/set-methods

Examples

library(treeman)
tree <- randTree(10)
# make tree taxonomic
tree <- setNdsSpn(tree, ids=tree['all'], vals=1)
summary(tree)
# remove spns by setting all to 0
tree <- setNdsSpn(tree, ids=tree['all'], vals=0)
summary(tree)

treeman documentation built on July 8, 2020, 7:28 p.m.