setNdsOther: Set a user defined slot for multiple nodes

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Return a tree with a user defined slot for node IDs.

Usage

setNdsOther(tree, ids, vals, slt_nm, parallel = FALSE, progress = "none")

Arguments

tree	TreeMan object
ids	id sof the nodes
vals	data for slot
slt_nm	slot name
parallel	logical, make parallel?
progress	name of the progress bar to use, see create_progress_bar

Details

Runs setNdOther() over multiple nodes. Parellizable.

See Also

setNdOther https://github.com/DomBennett/treeman/wiki/set-methods

Examples

library(treeman)
tree <- randTree(10)
# e.g. confidences for nodes
vals <- runif(min=0, max=1, n=tree['nall'])
tree <- setNdsOther(tree, tree['all'], vals, 'confidence')
tree <- updateSlts(tree)
summary(tree)
(getNdsSlt(tree, ids=tree['all'], slt_nm='confidence'))

treeman documentation built on July 8, 2020, 7:28 p.m.