mammals: Phylogenetic tree of Mammalia

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Bininda-Emonds et al. (2007)'s Mammalian supertree augmented with taxonomic information. Here used for testing and demonstrating treeman functions. See R script to see how the tree was generate: https://github.com/DomBennett/treeman/blob/master/other/generate_tree_data.R.

Usage

   data(mammals)

Format

mammals is a TreeMan object

Source

Bininda-Emonds et al. 2007. The Delayed Rise of Present-Day Mammals. Nature, 446(7135): 507-512

Examples

data(mammals) # load object
summary(mammals)
summary(mammals[['Homo_sapiens']])

Example output

Tree (TreeMan Object):
  + 4510 tips
  + 2108 internal nodes
  + With taxonomic names
  + Polytomous
  + PD 67400
  + Root node is "n6619"
Node (tip node):
  + ID: "Homo_sapiens"
  + txnym: "Homo"
  + prid: "n2939"
  + spn: 9.7
  + predist: 170
  + pd: 0

treeman documentation built on July 8, 2020, 7:28 p.m.