setNdsID: Set the IDs of multiple nodes

In treeman: Phylogenetic Tree Manipulation Class and Methods

Description

Return a tree with the IDs of nodes altered.

Usage

setNdsID(tree, ids, vals, parallel = FALSE, progress = "none")

Arguments

tree	TreeMan object
ids	ids to be changed
vals	new ids
parallel	logical, make parallel?
progress	name of the progress bar to use, see create_progress_bar

Details

Runs setNdID() over multiple nodes. Warning: all IDs must be unique, avoid spaces in IDs, only use numbers, letters and underscores. Parellizable.

See Also

setNdID https://github.com/DomBennett/treeman/wiki/set-methods

Examples

library(treeman)
tree <- randTree(10)
new_ids <- paste0('heffalump_', 1:tree['ntips'])
tree <- setNdsID(tree, tree['tips'], new_ids)
summary(tree)

treeman documentation built on July 8, 2020, 7:28 p.m.