API for updog
Flexible Genotyping for Polyploids

Global functions
betabinom Man page
combine_flex Source code
compute_all_log_bb Source code
compute_all_phifk Source code
compute_all_post_prob Source code
dbernbinom Source code
dbetabinom Man page Source code
dbetabinom_alpha_beta_double Source code
dbetabinom_double Source code
dc_dtau Source code
df_deps Source code
dlbeta_dc Source code
dlbeta_deps Source code
dlbeta_dh Source code
dlbeta_dtau Source code
dlbeta_dxi Source code
dpen_deps Source code
dpen_dh Source code
dxi_df Source code
dxi_dh Source code
elbo Source code
eta_double Source code
eta_fun Source code
expit Source code
export_vcf Man page Source code
f1_obj Source code
f1_s1_pp_obj Source code
filter_snp Man page Source code
flex_update_pivec Source code
flexdog Man page Source code
flexdog_full Man page Source code
flexdog_obj Source code
format_multidog Man page Source code
get_dimname Source code
get_genotype_likelihoods Source code
get_q_array Man page Source code
get_wik_mat Source code
grad_for_eps Source code
grad_for_mu_sigma2 Source code
grad_for_mu_sigma2_wrapper Source code
grad_for_weighted_lbb Source code
grad_for_weighted_lnorm Source code
initialize_pivec Source code
is.flexdog Man page Source code
is.multidog Man page Source code
log_sum_exp Man page Source code
log_sum_exp_2 Man page Source code
logit Source code
multidog Man page Source code
obj_for_alpha Source code
obj_for_eps Source code
obj_for_mu_sigma2 Source code
obj_for_mu_sigma2_wrapper Source code
obj_for_rho Source code
obj_for_weighted_lbb Source code
obj_for_weighted_lnorm Source code
oracle_cor Man page Source code
oracle_cor_from_joint Man page Source code
oracle_joint Man page Source code
oracle_mis Man page Source code
oracle_mis_from_joint Man page Source code
oracle_mis_vec Man page Source code
oracle_mis_vec_from_joint Man page Source code
oracle_plot Man page Source code
pbetabinom Man page Source code
pbetabinom_double Source code
pen_bias Source code
pen_seq_error Source code
plot.flexdog Man page Source code
plot.multidog Man page Source code
plot_geno Man page Source code
post_prob Source code
prob_dosage_pp Source code
prob_dosage_pp_unif Source code
prob_send_pp Source code
qbetabinom Man page Source code
qbetabinom_double Source code
rbetabinom Man page Source code
rbetabinom_int Source code
rflexdog Man page Source code
rgeno Man page Source code
set_par Source code
snpdat Man page
uitdewilligen Man page
undo_par Source code
update_f1_s1_pp Source code
updog Man page
updog-package Man page
wem Man page Source code
wem_fixp Source code
wem_obj Source code
xi_double Source code
xi_fun Source code
updog documentation built on Oct. 18, 2022, 9:07 a.m.