API for updog
Flexible Genotyping for Polyploids
| Global functions | |
|---|---|
| betabinom | Man page |
| combine_flex | Source code |
| compute_all_log_bb | Source code |
| compute_all_phifk | Source code |
| compute_all_post_prob | Source code |
| dbernbinom | Source code |
| dbetabinom | Man page Source code |
| dbetabinom_alpha_beta_double | Source code |
| dbetabinom_double | Source code |
| dc_dtau | Source code |
| df_deps | Source code |
| dlbeta_dc | Source code |
| dlbeta_deps | Source code |
| dlbeta_dh | Source code |
| dlbeta_dtau | Source code |
| dlbeta_dxi | Source code |
| dpen_deps | Source code |
| dpen_dh | Source code |
| dxi_df | Source code |
| dxi_dh | Source code |
| elbo | Source code |
| eta_double | Source code |
| eta_fun | Source code |
| expit | Source code |
| export_vcf | Source code |
| f1_obj | Source code |
| f1_s1_pp_obj | Source code |
| filter_snp | Man page Source code |
| flex_update_pivec | Source code |
| flexdog | Man page Source code |
| flexdog_full | Man page Source code |
| flexdog_obj | Source code |
| format_multidog | Man page Source code |
| get_dimname | Source code |
| get_genotype_likelihoods | Source code |
| get_q_array | Man page Source code |
| get_wik_mat | Source code |
| grad_for_eps | Source code |
| grad_for_mu_sigma2 | Source code |
| grad_for_mu_sigma2_wrapper | Source code |
| grad_for_weighted_lbb | Source code |
| grad_for_weighted_lnorm | Source code |
| initialize_pivec | Source code |
| is.flexdog | Man page Source code |
| is.multidog | Man page Source code |
| log_sum_exp | Man page Source code |
| log_sum_exp_2 | Man page Source code |
| logit | Source code |
| multidog | Man page Source code |
| obj_for_alpha | Source code |
| obj_for_eps | Source code |
| obj_for_mu_sigma2 | Source code |
| obj_for_mu_sigma2_wrapper | Source code |
| obj_for_rho | Source code |
| obj_for_weighted_lbb | Source code |
| obj_for_weighted_lnorm | Source code |
| oracle_cor | Man page Source code |
| oracle_cor_from_joint | Man page Source code |
| oracle_joint | Man page Source code |
| oracle_mis | Man page Source code |
| oracle_mis_from_joint | Man page Source code |
| oracle_mis_vec | Man page Source code |
| oracle_mis_vec_from_joint | Man page Source code |
| oracle_plot | Man page Source code |
| pbetabinom | Man page Source code |
| pbetabinom_double | Source code |
| pen_bias | Source code |
| pen_seq_error | Source code |
| plot.flexdog | Man page Source code |
| plot.multidog | Man page Source code |
| plot_geno | Man page Source code |
| post_prob | Source code |
| prob_dosage_pp | Source code |
| prob_dosage_pp_unif | Source code |
| prob_send_pp | Source code |
| qbetabinom | Man page Source code |
| qbetabinom_double | Source code |
| rbetabinom | Man page Source code |
| rbetabinom_int | Source code |
| rflexdog | Man page Source code |
| rgeno | Man page Source code |
| set_par | Source code |
| snpdat | Man page |
| uitdewilligen | Man page |
| undo_par | Source code |
| update_f1_s1_pp | Source code |
| updog | Man page |
| updog-package | Man page |
| wem | Man page Source code |
| wem_fixp | Source code |
| wem_obj | Source code |
| xi_double | Source code |
| xi_fun | Source code |
