API for updog
Flexible Genotyping for Polyploids

Global functions
ashpen_fun Man page Source code
betabinom Man page
compute_all_log_bb Man page Source code
compute_all_phifk Man page Source code
compute_all_post_prob Man page Source code
convolve Man page Source code
count_doubles Source code
count_pairings Source code
count_pairings_given_p Source code
dbernbinom Man page Source code
dbetabinom Man page Source code
dbetabinom_alpha_beta_double Man page Source code
dbetabinom_double Man page Source code
dc_dtau Man page Source code
df_deps Man page Source code
dist_from_p Source code
dlbeta_dc Man page Source code
dlbeta_deps Man page Source code
dlbeta_dh Man page Source code
dlbeta_dtau Man page Source code
dlbeta_dxi Man page Source code
doutdist Man page Source code
dpen_deps Man page Source code
dpen_dh Man page Source code
dr_pen Man page Source code
dxi_df Man page Source code
dxi_dh Man page Source code
elbo Man page Source code
eta_double Man page Source code
eta_fun Man page Source code
expit Man page Source code
f1_obj Man page Source code
flex_update_pivec Man page Source code
flexdog Man page Source code
flexdog_full Man page Source code
flexdog_obj Man page Source code
flexdog_obj_out Man page Source code
get_bivalent_probs Man page Source code
get_bivalent_probs_dr Man page Source code
get_conv_inner_weights Man page Source code
get_dimname Man page Source code
get_hyper_weights Man page Source code
get_inner_weights Man page Source code
get_pname Source code
get_probk_vec Man page Source code
get_q_array Man page Source code
get_uni_rep Man page Source code
get_wik_mat Man page Source code
get_wik_mat_out Man page Source code
grad_for_eps Man page Source code
grad_for_mu_sigma2 Man page Source code
grad_for_mu_sigma2_wrapper Man page Source code
grad_for_weighted_lbb Man page Source code
grad_for_weighted_lnorm Man page Source code
initialize_pivec Man page Source code
is.flexdog Man page Source code
is.mupdog Man page Source code
log_sum_exp Man page Source code
log_sum_exp_2 Man page Source code
logit Man page Source code
mupdog Man page Source code
mupout Man page
num_pairs Source code
obj_for_alpha Man page Source code
obj_for_eps Man page Source code
obj_for_mu_sigma2 Man page Source code
obj_for_mu_sigma2_wrapper Man page Source code
obj_for_rho Man page Source code
obj_for_weighted_lbb Man page Source code
obj_for_weighted_lnorm Man page Source code
oracle_cor Man page Source code
oracle_cor_from_joint Man page Source code
oracle_joint Man page Source code
oracle_mis Man page Source code
oracle_mis_from_joint Man page Source code
oracle_mis_vec Man page Source code
oracle_mis_vec_from_joint Man page Source code
oracle_plot Man page Source code
pbetabinom Man page Source code
pbetabinom_double Man page Source code
pen_bias Man page Source code
pen_seq_error Man page Source code
pivec_from_segmats Man page Source code
plot.flexdog Man page Source code
plot.mupdog Man page Source code
plot_geno Man page Source code
post_prob Man page Source code
pp_brent_obj Man page Source code
qbetabinom Man page Source code
qbetabinom_double Man page Source code
rbetabinom Man page Source code
rbetabinom_int Man page Source code
rflexdog Man page Source code
rgeno Man page Source code
s1pp_brent_obj Source code
s1pp_obj Source code
snpdat Man page
summary.mupdog Man page Source code
uitdewilligen Man page
uni_em Man page Source code
uni_em_const Man page Source code
uni_obj Man page Source code
uni_obj_const Man page Source code
update_R Man page Source code
update_dr Man page Source code
update_pp_f1 Man page Source code
update_pp_s1 Man page Source code
updog Man page
updog-package Man page
wem Man page Source code
wem_fixp Source code
wem_obj Source code
xi_double Man page Source code
xi_fun Man page Source code
updog documentation built on July 28, 2018, 1:04 a.m.