Files in updog
Flexible Genotyping for Polyploids

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/pp.R R/oracle.R R/data.R R/multidog.R R/updog.R R/ashdog.R R/plot_geno.R R/rflexdog.R
src/Makevars.win
src/Makevars
src/flexdog.cpp
src/RcppExports.cpp
src/oracle.cpp
src/util_funs.cpp
src/gradients.cpp
src/em.cpp
src/betabinom.cpp
src/objective.cpp
src/mupdog.h
inst/CITATION
inst/include/updog.h
inst/include/updog_RcppExports.h
inst/doc/oracle_calculations.Rmd inst/doc/smells_like_updog.Rmd inst/doc/simulate_ngs.Rmd inst/doc/simulate_ngs.R
inst/doc/simulate_ngs.html
inst/doc/multidog.R
inst/doc/multidog.html
inst/doc/smells_like_updog.R
inst/doc/oracle_calculations.html
inst/doc/multidog.Rmd
inst/doc/smells_like_updog.html
inst/doc/oracle_calculations.R
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/testdat.RData
tests/testthat/test_wikmat.R tests/testthat/test_gradients.R tests/testthat/test_dbetabinom.R tests/testthat/test_rflexdog.R tests/testthat/test_objectives.R tests/testthat/test_oracle.R
tests/testthat/cvx_prob.RDS
tests/testthat/out_err.RData
tests/testthat/test_flexdog.R tests/testthat/test_f1_genotyping.R tests/testthat/test_utils.R vignettes/oracle_calculations.Rmd vignettes/smells_like_updog.Rmd vignettes/simulate_ngs.Rmd vignettes/multidog.Rmd
data/uitdewilligen.RData
data/snpdat.RData
man/export_vcf.Rd man/multidog.Rd man/oracle_mis_vec.Rd man/oracle_mis_vec_from_joint.Rd man/oracle_joint.Rd man/plot_geno.Rd man/rgeno.Rd man/oracle_mis_from_joint.Rd man/get_q_array.Rd man/plot.multidog.Rd man/snpdat.Rd man/is.flexdog.Rd man/flexdog_full.Rd man/updog-package.Rd man/log_sum_exp.Rd man/wem.Rd man/format_multidog.Rd man/oracle_mis.Rd man/log_sum_exp_2.Rd man/filter_snp.Rd man/rflexdog.Rd man/oracle_plot.Rd man/betabinom.Rd man/is.multidog.Rd man/plot.flexdog.Rd man/uitdewilligen.Rd man/oracle_cor_from_joint.Rd man/flexdog.Rd man/oracle_cor.Rd
man/figures/logo.png
updog documentation built on Oct. 18, 2022, 9:07 a.m.