get_q_array: Return the probabilities of an offspring's genotype given its...
In updog: Flexible Genotyping for Polyploids
get_q_array R Documentation
Return the probabilities of an offspring's genotype given its
parental genotypes for all possible combinations of parental and
offspring genotypes. This is for species with polysomal inheritance
and bivalent, non-preferential pairing.
Description
Return the probabilities of an offspring's genotype given its
parental genotypes for all possible combinations of parental and
offspring genotypes. This is for species with polysomal inheritance
and bivalent, non-preferential pairing.
Usage
get_q_array(ploidy)
Arguments
ploidy
A positive integer. The ploidy of the species.
Value
An three-way array of proportions. The (i, j, k)th element
is the probability of an offspring having k - 1 reference
alleles given that parent 1 has i - 1 reference alleles and
parent 2 has j - 1 reference alleles. Each dimension of the
array is ploidy + 1. In the dimension names, "A" stands
for the reference allele and "a" stands for the
alternative allele.
Author(s)
David Gerard
Examples
qarray <- get_q_array(6)
apply(qarray, c(1, 2), sum) ## should all be 1's.
updog documentation built on May 29, 2024, 8:13 a.m.
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| get_q_array | R Documentation |
Return the probabilities of an offspring's genotype given its parental genotypes for all possible combinations of parental and offspring genotypes. This is for species with polysomal inheritance and bivalent, non-preferential pairing.
Description
Return the probabilities of an offspring's genotype given its parental genotypes for all possible combinations of parental and offspring genotypes. This is for species with polysomal inheritance and bivalent, non-preferential pairing.
Usage
get_q_array(ploidy)
Arguments
ploidy |
A positive integer. The ploidy of the species. |
Value
An three-way array of proportions. The (i, j, k)th element
is the probability of an offspring having k - 1 reference
alleles given that parent 1 has i - 1 reference alleles and
parent 2 has j - 1 reference alleles. Each dimension of the
array is ploidy + 1. In the dimension names, "A" stands
for the reference allele and "a" stands for the
alternative allele.
Author(s)
David Gerard
Examples
qarray <- get_q_array(6)
apply(qarray, c(1, 2), sum) ## should all be 1's.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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