format_multidog: Return arrayicized elements from the output of 'multidog'.

In updog: Flexible Genotyping for Polyploids

Return arrayicized elements from the output of multidog.

Description

This function will allow you to have genotype estimates, maximum posterior probability, and other values in the form of a matrix/array. If multiple variable names are provided, the data are formatted as a 3-dimensional array with the dimensions corresponding to (individuals, SNPs, variables).

Usage

format_multidog(x, varname = "geno")

Arguments

x	The output of multidog.
varname	A character vector of the variable names whose values populate the cells. These should be column names from x$inddf.

Details

Note that the order of the individuals will be reshuffled. The order of the SNPs should be the same as in x$snpdf.

Author(s)

David Gerard

updog documentation built on May 29, 2024, 8:13 a.m.