uitdewilligen: Subset of individuals and SNPs from Uitdewilligen et al...
In updog: Flexible Genotyping for Polyploids
uitdewilligen R Documentation
Subset of individuals and SNPs from Uitdewilligen et al (2013).
Description
A list containing a matrix of reference counts, a matrix of total counts, and the ploidy level (4) of the species.
This is a subset of the data from Uitdewilligen et al (2013).
Usage
uitdewilligen
Format
A list containing three objects. Two matrices and a numeric scalar:
- refmat
A matrix of read counts containing the reference allele. The rows index the individuals and the columns index the SNPs.
- sizemat
A matrix of the total number of read counts. The rows index the individuals and the columns index the SNPs.
- ploidy
The ploidy level of the species (just 4).
Value
A list. See the Format Section.
Source
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}
References
Uitdewilligen, J. G., Wolters, A. M. A., Bjorn, B., Borm, T. J., Visser, R. G., & van Eck, H. J. (2013). A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One, 8(5), e62355. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}
updog documentation built on May 29, 2024, 8:13 a.m.
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| uitdewilligen | R Documentation |
Subset of individuals and SNPs from Uitdewilligen et al (2013).
Description
A list containing a matrix of reference counts, a matrix of total counts, and the ploidy level (4) of the species. This is a subset of the data from Uitdewilligen et al (2013).
Usage
uitdewilligen
Format
A list containing three objects. Two matrices and a numeric scalar:
- refmat
A matrix of read counts containing the reference allele. The rows index the individuals and the columns index the SNPs.
- sizemat
A matrix of the total number of read counts. The rows index the individuals and the columns index the SNPs.
- ploidy
The ploidy level of the species (just 4).
Value
A list. See the Format Section.
Source
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}References
Uitdewilligen, J. G., Wolters, A. M. A., Bjorn, B., Borm, T. J., Visser, R. G., & van Eck, H. J. (2013). A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One, 8(5), e62355. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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