names.sidechain.atoms: Sidechain Atom Names

In vanddraabe: Identification and Statistical Analysis of Conserved Waters Near Proteins

Description

Sidechain atom names based on PDB atom naming conventions.

Usage

names.sidechain.atoms

Format

An object of class character of length 32.

Details

The 32 unique sidechain atom names. The first character is the element and the second character is the Greek letter (B=beta, D=delta, E=epsilon, G=gamma, Z=zeta) defining the specific position within the sidechain. The exception to the use of Greek letters is OH indicating a hydroxyl group at the para position of the six-member ring of tyrosine. Some sidechain atom names have a number in the third character position when there are mirrored/symetrical atoms; e.g., CG1 and CG2 of valine.

Author(s)

Emilio Xavier Esposito [e-mail]

See Also

Other constants: names.backbone.atoms, names.polar.atoms, names.res.AtomTypes, names.resATs.carb.sulf, names.resATs.nitro.neut, names.resATs.nitro.pos, names.resATs.oxy.neg, names.resATs.oxy.neut, names.residues, names.waters

Examples

  names.sidechain.atoms
  # [1] "CB"  "CG"  "CD"  "NE"  "CZ"  "NH1" "NH2" "OD1" "ND2" "OD2" "SG"
  #     "OE1" "NE2" "OE2" "CD2" "ND1" "CE1" "CG1" "CG2" "CD1" "CE"  "NZ"
  #     "SD"  "CE2" "OG"  "OG1" "NE1" "CE3" "CZ2" "CZ3" "CH2" "OH"

vanddraabe documentation built on June 8, 2019, 1:03 a.m.