| absval.cwres.vs.cov.bw | Absolute conditional weighted residuals vs covariates for... |
| absval.cwres.vs.pred | Absolute population conditional weighted residuals vs... |
| absval.cwres.vs.pred.by.cov | Absolute value of the conditional weighted residuals vs.... |
| absval_delta_vs_cov_model_comp | Model comparison plots, of absolute differences in... |
| absval.iwres.cwres.vs.ipred.pred | Absolute population weighted residuals vs population... |
| absval.iwres.vs.cov.bw | box and whisker plots of the absolute value of the individual... |
| absval.iwres.vs.idv | absolute value of the individual weighted residuals vs. the... |
| absval.iwres.vs.ipred | Absolute individual weighted residuals vs individual... |
| absval.iwres.vs.ipred.by.cov | Absolute individual weighted residuals vs individual... |
| absval.iwres.vs.pred | Absolute individual weighted residuals vs population... |
| absval.wres.vs.cov.bw | Absolute weighted residuals vs covariates for Xpose 4 |
| absval.wres.vs.idv | Absolute value of (C)WRES vs. independent variable plot in... |
| absval.wres.vs.pred | Absolute population weighted residuals vs population... |
| absval.wres.vs.pred.by.cov | Absolute population weighted residuals vs population... |
| add.grid.table | Print tables or text in a grid object |
| addid | Generic internal functions for Xpose 4 |
| addit.gof | Additional goodness-of-fit plots, for Xpose 4 |
| add.model.comp | Additional model comparison plots, for Xpose 4 |
| add_transformed_columns | Column-transformation functions for Xpose 4 |
| autocorr.cwres | Autocorrelation of conditional weighted residuals for Xpose 4 |
| autocorr.iwres | autocorrelation of the individual weighted residuals |
| autocorr.wres | Autocorrelation of weighted residuals for Xpose 4 |
| basic.gof | Basic goodness-of-fit plots, for Xpose 4 |
| basic.model.comp | Basic model comparison plots, for Xpose 4 |
| bootgam.print | Print summary information for a bootgam or bootscm |
| boot.hist | Function to create histograms of results from the 'bootstrap'... |
| bootscm.import | Import bootscm data into R/Xpose |
| cat.dv.vs.idv.sb | Categorical observations vs. independent variable using... |
| categorical.table | Generic table functions for Xpose 4 |
| cat.pc | Categorical (visual) predictive check. |
| change_graphical_parameters | Functions changing variable definitions in Xpose 4 |
| change_misc_parameters | Functions changing miscellaneous parameter settings in Xpose... |
| change.parm | Change parameter scope. |
| change.var.name | Changes the name of an Xpose data item |
| change.xlabel | Changes the label of an Xpose data item |
| change.xvardef | Change Xpose variable definitions. |
| check.vars | Data functions for Xpose 4 |
| compute.cwres | Compute the Conditional Weighted Residuals |
| create.mirror | Function to create mirror plots from the generic Xpose... |
| createXposeClasses | This function creates the Xpose data classes ("xpose.data"... |
| create.xpose.plot.classes | Create xpose.multiple.plot class. |
| cwres.dist.hist | Histogram of conditional weighted residuals (CWRES), for... |
| cwres.dist.qq | Quantile-quantile plot of conditional weighted residuals... |
| cwres.vs.cov | Conditional Weighted residuals (CWRES) plotted against... |
| cwres.vs.idv | Population conditional weighted residuals (CWRES) plotted... |
| cwres.vs.idv.bw | Box-and-whisker plot of conditional weighted residuals vs the... |
| cwres.vs.pred | Population conditional weighted residuals (CWRES) plotted... |
| cwres.vs.pred.bw | Box-and-whisker plot of conditional weighted residuals vs... |
| cwres.wres.vs.idv | Weighted residuals (WRES) and conditional WRES (CWRES)... |
| cwres.wres.vs.pred | Weighted residuals (WRES) and conditional WRES (CWRES)... |
| data.checkout | Check through the source dataset to detect problems |
| data_extract_or_assign | Extract or assign data from an xpose.data object. |
| db.names | Prints the contents of an Xpose data object |
| dOFV1.vs.dOFV2 | Change in individual objective function value 1 vs.... |
| dOFV.vs.cov | Change in individual objective function value vs. covariate... |
| dOFV.vs.id | Change in Objective function value vs. removal of... |
| dv.preds.vs.idv | Observations (DV), individual predictions (IPRED) and... |
| dv.vs.idv | Observations (DV) plotted against the independent variable... |
| dv.vs.ipred | Observations (DV) plotted against individual predictions... |
| dv.vs.ipred.by.cov | Dependent variable vs individual predictions, conditioned on... |
| dv.vs.ipred.by.idv | Dependent variable vs individual predictions, conditioned on... |
| dv.vs.pred | Observations (DV) plotted against population predictions... |
| dv.vs.pred.by.cov | Dependent variable vs population predictions, conditioned on... |
| dv.vs.pred.by.idv | Dependent variable vs population predictions, conditioned on... |
| dv.vs.pred.ipred | Observations (DV) are plotted against individual predictions... |
| export.graph.par | Exports Xpose graphics settings to a file. |
| export.variable.definitions | Exports Xpose variable definitions to a file from an Xpose... |
| find.right.table | Internal functions for the VPC |
| GAM_summary_and_plot | GAM functions for Xpose 4 |
| gof | Structured goodness of fit diagnostics. |
| import.graph.par | Imports Xpose graphics settings from a file to an Xpose data... |
| import.variable.definitions | Imports Xpose variable definitions from a file to an Xpose... |
| ind.plots | Observations (DV), individual predictions (IPRED) and... |
| ind.plots.wres.hist | Histograms of weighted residuals for each individual in an... |
| ind.plots.wres.qq | Quantile-quantile plots of weighted residuals for each... |
| ipred.vs.idv | Individual predictions (IPRED) plotted against the... |
| iwres.dist.hist | Histogram of individual weighted residuals (IWRES), for Xpose... |
| iwres.dist.qq | Quantile-quantile plot of individual weighted residuals... |
| iwres.vs.idv | Individual weighted residuals (IWRES) plotted against the... |
| kaplan.plot | Kaplan-Meier plots of (repeated) time-to-event data |
| make.sb.data | Make stacked bar data set. |
| npc.coverage | Function to plot the coverage of the Numerical Predictive... |
| nsim | Extract or set the value of the Nsim slot. |
| par_cov_hist | Plot the parameter or covariate distributions using a... |
| par_cov_qq | Plot the parameter or covariate distributions using... |
| par_cov_splom | Plot scatterplot matrices of parameters, random parameters or... |
| par_cov_summary | Summarize individual parameter values and covariates |
| parm.vs.cov | Parameters plotted against covariates, for Xpose 4 |
| parm.vs.parm | Plot parameters vs other parameters |
| pred.vs.idv | Population predictions (PRED) plotted against the independent... |
| print.xpose.multiple.plot | Print an Xpose multiple plot object. |
| randtest.hist | Function to create a histogram of results from the... |
| ranpar.vs.cov | Random parameters plotted against covariates, for Xpose 4 |
| read_NM_output | Read NONMEM output files into Xpose 4 |
| read_nm_table | Read NONMEM table files produced from simulation. |
| read.nm.tables | Reading NONMEM table files |
| read.npc.vpc.results | Read the results file from a Numerical or Visual Predictive... |
| read.TTE.sim.data | Read (repeated) time-to-event simulation data files. |
| read.vpctab | Read the vpctab file from PsN into Xpose |
| reset.graph.par | Resets Xpose variable definitions to factory settings |
| runsum | Print run summary in Xpose 4 |
| simprazExample | Function to create files for the simulated prazosin example... |
| simpraz.xpdb | Simulated prazosin Xpose database. |
| tabulate.parameters | Tabulate the population parameter estimates |
| wres.dist.hist | Histogram of weighted residuals (WRES), for Xpose 4 |
| wres.dist.qq | Quantile-quantile plot of weighted residuals (WRES), for... |
| wres.vs.cov | Weighted residuals (WRES) plotted against covariates, for... |
| wres.vs.idv | Population weighted residuals (WRES) plotted against the... |
| wres.vs.idv.bw | Box-and-whisker plot of weighted residuals vs the independent... |
| wres.vs.pred | Population weighted residuals (WRES) plotted against... |
| wres.vs.pred.bw | Box-and-whisker plot of weighted residuals vs population... |
| xlabel | Extract and set labels for Xpose data items. |
| xp.boot.par.est | Compare parameter estimates for covariate coefficients |
| xp.boot.par.est.corr | Correlations between covariate coefficients |
| xp.daic.npar.plot | Distribution of difference in AIC |
| xp.distr.mod.size | Plot of model size distribution for a bootgam or bootscm |
| xp.dofv.npar.plot | Distribution of difference in OFV |
| xp.dofv.plot | OFV difference (optimism) plot. |
| xp.get.disp | Default function for calculating dispersion in 'xpose.gam'. |
| xp.inc.cond.stab.cov | Trace plots for conditional indices |
| xp.inc.ind.cond.stab.cov | Trace plots for conditional indices rper replicate number |
| xp.incl.index.cov | Plot of inclusion index of covariates. |
| xp.incl.index.cov.comp | Inclusion index individuals, compare between covariates. |
| xp.incl.index.cov.ind | Individual inclusion index |
| xp.inc.prob | Inclusion frequency plot |
| xp.inc.prob.comb.2 | Inclusion frequency plot for combination of covariates. |
| xp.inc.stab.cov | Inclusion stability plot A plot of the inclusion frequency of... |
| xpose4 | Classic menu system for Xpose 4 |
| xpose4-package | The Xpose Package |
| xpose.ask.for.filename | Function to ask the user for the name of a file |
| xpose.bootgam | Title |
| xpose.create.title | Functions to create labels for plots |
| xpose.create.title.text | Create Xpose title text for plots. |
| xpose.data | Create an Xpose data object |
| xpose.data-class | Class xpose.data |
| xpose.dev.new | Create a new graphical device for an Xpose plot. |
| xpose.gam | Stepwise GAM search for covariates on a parameter (Xpose 4) |
| xpose.license.citation | Displays the Xpose license and citation information |
| xpose.multiple.plot | Create and object with class "xpose.multiple.plot". |
| xpose.multiple.plot-class | Class for creating multiple plots in xpose |
| xpose.multiple.plot.default | Xpose 4 generic function for plotting multiple lattice... |
| xpose.panel.bw | Default box-and-whisker panel function for Xpose 4 |
| xpose.panel.default | Default panel function for Xpose 4 |
| xpose.panel.histogram | Default histogram panel function for Xpose 4 |
| xpose.panel.qq | Default QQ panel function for Xpose 4 |
| xpose.panel.splom | Scatterplot matrix panel function for Xpose 4 |
| xpose.plot.bw | The generic Xpose functions for box-and-whisker plots |
| xpose.plot.default | The Xpose 4 generic functions for continuous y-variables. |
| xpose.plot.histogram | The Xpose 4 generic functions for continuous y-variables. |
| xpose.plot.qq | The generic Xpose functions for QQ plots |
| xpose.plot.splom | The Xpose 4 generic functions for scatterplot matrices. |
| xpose.prefs-class | Class "xpose.prefs" |
| xpose.print | Summarize an xpose database |
| xpose.string.print | Print a pretty string. |
| xpose.VPC | Visual Predictive Check (VPC) using XPOSE |
| xpose.VPC.both | Xpose Visual Predictive Check (VPC) for both continuous and... |
| xpose.VPC.categorical | Xpose visual predictive check for categorical data. |
| xpose.yscale.components.log10 | Functions to create nice looking axes when using Log scales. |
| xp.scope3 | Define a scope for the gam. Used as default input to the... |
| xsubset | Extract or set the value of the Subset slot. |
| xvardef | Extract and set Xpose variable definitions. |
