API for yCrypticRNAs
Cryptic Transcription Analysis in Yeast
| Global functions | |
|---|---|
| CrypticScore | Source code |
| annotations | Man page |
| annotationsSet | Man page Source code |
| area_under_diagonale | Source code |
| as.annotationsSet | Man page Source code |
| as_fragments | Source code |
| bam_to_coverage | Source code |
| bam_to_reads | Man page Source code |
| bam_to_reads_by_gene | Source code |
| calculate_intervals | Source code |
| coverage | Man page Source code |
| coverageDataSet | Man page Source code |
| coverage_cpp | Source code |
| difference_of_cdf | Source code |
| enrichment_score | Man page Source code |
| fscore | Source code |
| fscore_bootstrap | Source code |
| gene_coverage | Man page Source code |
| gene_coverage_from_reads | Source code |
| genome_wide_scores | Man page Source code |
| get_annotation | Source code |
| get_data_from_coverage | Source code |
| get_data_from_reads | Source code |
| get_genes | Source code |
| initiation_sites | Man page Source code |
| introns | Man page |
| methodA | Source code |
| methodB | Source code |
| methodC | Source code |
| methodC_gaussian | Source code |
| methodD | Source code |
| ndex_bam | Source code |
| perpendicular_distance | Source code |
| plot.geneCoverage | Source code |
| print.CrypticScore | Source code |
| print.coverageDataSet | Source code |
| print.geneCoverage | Source code |
| ratio | Source code |
| ratio_score | Man page Source code |
| remove_introns | Source code |
| rna_seq_signals | Man page |
| samtobed | Source code |
| scale_data | Source code |
| select_flag | Source code |
| select_neg_strand | Source code |
| select_pos_strand | Source code |
| simulate_fscore_values | Source code |
| substr_left | Source code |
| three_prime_enrichment | Source code |
| writeFile | Source code |
| yCrypticRNAs | Man page |
| yCrypticRNAs-package | Man page |
| yer109c | Man page |
| zscore | Source code |
| zscore_score | Man page Source code |
