zscore_score: Z score

In yCrypticRNAs: Cryptic Transcription Analysis in Yeast

Description

Calculates the cryptic score (z score) using the probabilistic method.

Usage

zscore_score(geneCoverage, iterations = 10000)

Arguments

geneCoverage	object of type geneCoverage containing the RNA-seq coverage values for one gene.
iterations	A number indicating the number of iterations. Default = 10000.

Value

An object of class 'CrypticScore' with the following components:

geneAnnotation	An object of class annotationsSet containing the information on the gene.
crypticScore	Cryptic score obtained by comparing type2 data to type1 data
controls	A list containing the scores obtained by comparing replicates of each type of data
method	The method used.

Examples

data(yer109c)
zscore_score(geneCoverage = yer109c, iterations = 1000)

yCrypticRNAs documentation built on May 29, 2017, 5:49 p.m.