Description Usage Arguments Value Examples
View source: R/cryptic_transcripts_methods.R
Calculates the cryptic score (3' enrichment score) using the 3'/5' ratio method as described in DeGennaro et al., 2013.
1 | enrichment_score(geneCoverage)
|
geneCoverage |
object of type geneCoverage containing the coverage values for all samples. |
An object of class 'CrypticScore' with the following components:
geneAnnotation |
An object of class |
crypticScore |
Cryptic score obtained by comparing type2 data to type1 data |
controls |
A list containing the scores obtained by comparing replicates of each type of data |
method |
The method used. |
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