ratio_score: 3'/5' ratio score

In yCrypticRNAs: Cryptic Transcription Analysis in Yeast

Description

Calculates the cryptic score (ratio score) using the 3'/5' ratio method as described in Cheung et al., 2008.

Usage

ratio_score(geneCoverage, windowLength = 100)

Arguments

geneCoverage	object of type geneCoverage containing the coverage values for all samples.
windowLength	A integer indicating the length of the window to use at each end of the gene.

Value

An object of class 'CrypticScore' with the following components:

geneAnnotation	An object of class annotationsSet containing the information on the gene.
crypticScore	Cryptic score obtained by comparing type2 data to type1 data
controls	A list containing the scores obtained by comparing replicates of each type of data
method	The method used.

Examples

data(yer109c)
ratio_score(yer109c)

yCrypticRNAs documentation built on May 29, 2017, 5:49 p.m.