annotationsSet: Create a geneAnnotation object.

In yCrypticRNAs: Cryptic Transcription Analysis in Yeast

Description

Create a geneAnnotation object containing the informations on chromosomes, start and end positions, strand, score and name of genes.

Usage

annotationsSet(biomart = "ENSEMBL_MART_ENSEMBL",
  dataset = "scerevisiae_gene_ensembl", host = "www.ensembl.org")

Arguments

biomart	BioMart database name you want to connect to.
dataset	Dataset you want to use.
host	Host to connect to.

Details

Please see useMart for further information.

Value

An object of class geneAnnotation with the following components:

chromosome	Gene chromosome.
start	Gene transcription start site.
end	Gene transcription termination site.
name	Gene name.
score	Gene score.
strand	Gene strand.

Examples

annotationsSet()

yCrypticRNAs documentation built on May 29, 2017, 5:49 p.m.