Man pages for yCrypticRNAs
Cryptic Transcription Analysis in Yeast
| annotations | Saccharomyce cerevisiae genes annotations. |
| annotationsSet | Create a geneAnnotation object. |
| as.annotationsSet | Convert a data.table into a geneAnnotation object. |
| bam_to_reads | Convert BAM files into BED files containing the reads... |
| coverage | Report coverage. |
| coverageDataSet | Create a CoverageDataSet |
| enrichment_score | 3' enrichment score |
| gene_coverage | Compute coverage data for a specific gene. |
| genome_wide_scores | Genome-wide cryptic scores. |
| initiation_sites | Cryptic transcription start sites (cTSS) |
| introns | Saccharomyce cerevisiae introns annotations. |
| ratio_score | 3'/5' ratio score |
| rna_seq_signals | Coverage dataset for FLO8, CDC14 and SNC1 gene. |
| yCrypticRNAs | Cryptic transcription analysis in yeast. |
| yer109c | Coverage dataset for FLO8 gene. |
| zscore_score | Z score |
