| .getComponent |
Source code
|
| .getEntry1ID |
Source code
|
| .getEntry2ID |
Source code
|
| .getEntryID |
Source code
|
| .getGraphics |
Source code
|
| .getLink |
Source code
|
| .getName |
Source code
|
| .getSubtype |
Source code
|
| .getTitle |
Source code
Source code
|
| .getType |
Source code
|
| .getValue |
Source code
|
| .subtypeDisplay |
Source code
|
| .xmlChildrenWarningFree |
Source code
|
| KEGGEdge-class |
Man page
|
| KEGGEdgeSubType-class |
Man page
|
| KEGGEdgeSubtype |
Man page
|
| KEGGEdgeType |
Man page
|
| KEGGGraphics-class |
Man page
|
| KEGGGroup-class |
Man page
|
| KEGGNode-class |
Man page
|
| KEGGNodeType |
Man page
|
| KEGGPATHID2NAME |
Man page
|
| KEGGPathway-class |
Man page
|
| KEGGPathwayInfo-class |
Man page
|
| KEGGReaction-class |
Man page
|
| KEGGgraphLegend |
Man page
Source code
|
| KEGGpathway2Graph |
Man page
Source code
|
| KEGGpathway2reactionGraph |
Man page
Source code
|
| edges,KEGGPathway,ANY-method |
Man page
|
| edges,KEGGPathway-method |
Man page
|
| edges<- |
Man page
|
| edges<-,KEGGPathway-method |
Man page
|
| entryID<- |
Man page
|
| entryID<-,KEGGEdge-method |
Man page
|
| entryID<-,KEGGNode-method |
Man page
|
| expandKEGGNode |
Man page
Source code
|
| expandKEGGPathway |
Man page
Source code
|
| getCategoryIndepKGMLurl |
Man page
Source code
|
| getComponent |
Man page
|
| getComponent,KEGGGroup-method |
Man page
|
| getComponent,KEGGNode-method |
Man page
|
| getDisplayName |
Man page
|
| getDisplayName,KEGGNode-method |
Man page
|
| getDisplayName,graph-method |
Man page
|
| getDisplayName-methods |
Man page
|
| getEntryID |
Man page
|
| getEntryID,KEGGEdge-method |
Man page
|
| getEntryID,KEGGNode-method |
Man page
|
| getEntryID,list-method |
Man page
|
| getEntryID-methods |
Man page
|
| getKEGGID |
Man page
|
| getKEGGID,KEGGNode-method |
Man page
|
| getKEGGID-methods |
Man page
|
| getKEGGedgeData |
Man page
Source code
|
| getKEGGgeneLink |
Man page
|
| getKEGGgeneLink,character-method |
Man page
|
| getKEGGgeneLink-methods |
Man page
|
| getKEGGnodeData |
Man page
Source code
|
| getKGMLurl |
Man page
Source code
|
| getName |
Man page
|
| getName,KEGGEdge-method |
Man page
|
| getName,KEGGEdgeSubType-method |
Man page
|
| getName,KEGGEdgeSubtype-method |
Man page
|
| getName,KEGGNode-method |
Man page
|
| getName,KEGGPathway-method |
Man page
|
| getName,KEGGPathwayInfo-method |
Man page
|
| getName,KEGGReaction-method |
Man page
|
| getName-methods |
Man page
|
| getNamedElement |
Man page
Source code
|
| getPathwayInfo |
Man page
|
| getPathwayInfo,KEGGPathway-method |
Man page
|
| getPathwayInfo-methods |
Man page
|
| getProduct |
Man page
|
| getProduct,KEGGReaction-method |
Man page
|
| getReactions |
Man page
|
| getReactions,KEGGPathway-method |
Man page
|
| getReactions-methods |
Man page
|
| getRgraphvizEdgeNames |
Man page
Source code
|
| getSubstrate |
Man page
|
| getSubstrate,KEGGReaction-method |
Man page
|
| getSubtype |
Man page
|
| getSubtype,KEGGEdge-method |
Man page
|
| getSubtype,graph-method |
Man page
|
| getSubtype-methods |
Man page
|
| getTitle |
Man page
|
| getTitle,KEGGPathway-method |
Man page
Man page
|
| getTitle,KEGGPathwayInfo-method |
Man page
|
| getTitle-methods |
Man page
|
| getType |
Man page
|
| getType,KEGGEdge-method |
Man page
|
| getType,KEGGNode-method |
Man page
|
| getType,KEGGReaction-method |
Man page
|
| getType-methods |
Man page
|
| getValue |
Man page
|
| getValue,KEGGEdgeSubType-method |
Man page
|
| getValue,KEGGEdgeSubtype-method |
Man page
|
| getValue-methods |
Man page
|
| graphDensity |
Man page
Source code
|
| isHomoList |
Man page
Source code
|
| kgmlFileName2PathwayName |
Man page
Source code
|
| kgmlNonmetabolicName2MetabolicName |
Man page
Source code
|
| mergeGraphs |
Man page
Source code
|
| mergeKEGGgraphs |
Man page
Source code
|
| name<- |
Man page
|
| name<-,KEGGNode-method |
Man page
|
| neighborhood |
Man page
Source code
|
| nodes,KEGGPathway-method |
Man page
|
| nodes<-,KEGGPathway,ANY-method |
Man page
|
| parseEntry |
Man page
Source code
|
| parseGraphics |
Man page
Source code
|
| parseKGML |
Man page
Source code
|
| parseKGML2DataFrame |
Man page
Source code
|
| parseKGML2Graph |
Man page
Source code
|
| parseKGMLexpandMaps |
Man page
Source code
|
| parsePathwayInfo |
Man page
Source code
|
| parseReaction |
Man page
Source code
|
| parseRelation |
Man page
Source code
|
| parseSubType |
Man page
Source code
|
| plotKEGGgraph |
Man page
Source code
|
| pvalue2asterisk |
Man page
Source code
|
| queryKEGGsubgraph |
Man page
Source code
|
| randomSubGraph |
Man page
Source code
|
| retrieveKGML |
Man page
Source code
|
| setKEGGedgeData |
Man page
Source code
|
| setKEGGnodeData |
Man page
Source code
|
| show,KEGGEdge-method |
Man page
|
| show,KEGGEdgeSubType-method |
Man page
|
| show,KEGGNode-method |
Man page
|
| show,KEGGPathway-method |
Man page
|
| show,KEGGPathwayInfo-method |
Man page
|
| show,KEGGReaction-method |
Man page
|
| splitKEGGgroup |
Man page
Source code
|
| subGraphByNodeType |
Man page
Source code
|
| subKEGGgraph |
Man page
Source code
|
| subtypeDisplay |
Man page
|
| subtypeDisplay,KEGGEdge-method |
Man page
|
| subtypeDisplay,KEGGEdgeSubType-method |
Man page
|
| subtypeDisplay,graph-method |
Man page
|
| subtypeDisplay-methods |
Man page
|
| top |
Man page
|
| translateGeneID2KEGGID |
Man page
Source code
|
| translateKEGG2GeneID |
Man page
Source code
|
| translateKEGGID2GeneID |
Man page
Source code
|
| translateKEGGgraph |
Man page
Source code
|
