expandKEGGPathway: Expand KEGG Pathway
In Accio/KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
expandKEGGPathway R Documentation
Expand KEGG Pathway
Description
The function expands paralogue nodes in KEGG pathway and returns
expanded KEGG pathway, KEGG node and edge data is maintained.
Usage
expandKEGGPathway(pathway)
Arguments
pathway
An object of KEGGPathway-class
Details
The function expands nodes with paralogues in KEGG pathway and copy
neccessary edges.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
See Also
expandKEGGNode
Examples
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.expandpathway <- expandKEGGPathway(kegg.pathway)
Accio/KEGGgraph documentation built on Jan. 13, 2023, 1:03 p.m.
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| expandKEGGPathway | R Documentation |
Expand KEGG Pathway
Description
The function expands paralogue nodes in KEGG pathway and returns expanded KEGG pathway, KEGG node and edge data is maintained.
Usage
expandKEGGPathway(pathway)
Arguments
pathway |
An object of |
Details
The function expands nodes with paralogues in KEGG pathway and copy neccessary edges.
Value
An object of KEGGPathway-class
Author(s)
Jitao David Zhang mailto:jitao_david.zhang@roche.com
See Also
expandKEGGNode
Examples
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.expandpathway <- expandKEGGPathway(kegg.pathway)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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