getKEGGnodeData | R Documentation |
The 'get' methods extracts KEGG node (edge) attributes from a graph produced
by calling parseKGML2Graph
or
KEGGpathway2Graph
. The 'set' methods writes a list into
the edge or node data.
getKEGGnodeData(graph, n) getKEGGedgeData(graph, n)
graph |
a graph object by parsing KGML file, where KEGG node and edge attributes are maintained |
n |
optional character string, name of the desired node or edge. If is missing all node Data is returned |
Node and edge data is stored as list within environments in graphs to save
memory and speed up graph manipulations. When using
getKEGGnodeData
or getKEGGedgeData
is called, the list
is extracted out of the environment and returned.
Either a list or single item of KEGGNode-class
or
KEGGEdge-class
object(s).
These functions will be unified into 'KEGGnodeData' and 'KEGGnodeData<-' forms.
Jitao David Zhang mailto:jitao_david.zhang@roche.com
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph") gR <- parseKGML2Graph(sfile,expandGenes=TRUE) getKEGGnodeData(gR,"hsa:4214") getKEGGedgeData(gR,"hsa:4214~hsa:5605")
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