kgmlFileName2PathwayName: Convert KGML file name to pathway name
In Accio/KEGGgraph: KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

kgmlFileName2PathwayName

R Documentation

Convert KGML file name to pathway name

Description

The function uses KEGG package and converts KGML file name into human readable pathway name.

Usage

kgmlFileName2PathwayName(filename)

Arguments

filename

A KGML file name

Details

So far it only supports KGML files organized by species.

NOTE: there is issue of package loading sequence to use this function: the 'KEGG.db' must be loaded before 'KEGGgraph' to use it properly. Otherwise the mget returns error of 'KEGGPATHID2NAME' is not a environment. So far I don't where does this bug come from, so I commented out the examples.