Files in Accio/KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

R/annotation.R R/graph.R R/kegg2graph-functions.R R/kgmlfile.R R/misc.R R/parse.R R/vis.R README.md man/KEGGEdge-class.Rd man/KEGGEdgeSubType-class.Rd man/KEGGEdgeSubtype.Rd man/KEGGEdgeType.Rd man/KEGGGraphics-class.Rd man/KEGGGroup-class.Rd man/KEGGNode-class.Rd man/KEGGNodeType.Rd man/KEGGPATHID2NAME.Rd man/KEGGPathway-class.Rd man/KEGGPathwayInfo-class.Rd man/KEGGReaction-class.Rd man/KEGGpathway2Graph.Rd man/KEGGpathway2reactionGraph.Rd man/expandKEGGNode.Rd man/expandKEGGPathway.Rd man/getDisplayName-methods.Rd man/getEntryID-methods.Rd man/getKEGGID-methods.Rd man/getKEGGgeneLink-methods.Rd man/getKEGGnodeData.Rd man/getKGMLurl.Rd man/getName-methods.Rd man/getNamedElement.Rd man/getPathwayInfo-methods.Rd man/getReactions-methods.Rd man/getRgraphvizEdgeNames.Rd man/getSubtype-methods.Rd man/getTitle-methods.Rd man/getType-methods.Rd man/getValue-methods.Rd man/graphDensity.Rd man/isHomoList.Rd man/kgmlFileName2PathwayName.Rd man/mergeGraphs.Rd man/mergeKEGGgraphs.Rd man/neighborhood.Rd man/parseEntry.Rd man/parseGraphics.Rd man/parseKGML.Rd man/parseKGML2DataFrame.Rd man/parseKGML2Graph.Rd man/parseKGMLexpandMaps.Rd man/parsePathwayInfo.Rd man/parseReaction.Rd man/parseRelation.Rd man/parseSubType.Rd man/plotKEGGgraph.Rd man/pvalue2asterisk.Rd man/queryKEGGsubgraph.Rd man/randomSubGraph.Rd man/splitKEGGgroup.Rd man/subGraphByNodeType.Rd man/subKEGGgraph.Rd man/subtypeDisplay-methods.Rd man/top.Rd man/translateKEGGID2GeneID.Rd man/translateKEGGgraph.Rd tests/kegg2graph.R tests/testthat.R tests/testthat/testGraph.R tests/testthat/test_KEGGgraph.R tests/testthat/test_reactionsAsDataFrame.R