Man pages for Albluca/rRoma
An r implementation of ROMA
| CompareAcrossSamples | Compare ROMA scores across samples from different populations |
| ConvertModuleNames | Conversion between gene naming convenctions and organisms of... |
| ConvertNames | Conversion between gene naming convenctions and organisms |
| DetectOutliers | Detect outliers |
| ExploreGeneProperties | Title |
| FixPCSign | Correct the sign of the principal component |
| GetComb | Returns all groups |
| GetCorrelations | Title |
| GetSingle | Return its input if it is a single value, else return NA |
| GetTopContrib | Get the top contributing genes per geneset |
| InferBinaryWeigth | Infer weigths from expression data |
| PCrRoma.R | Perform PcROMA on a datasets |
| Plot.Genesets | Plot genesets information |
| PlotGeneWeight | Plot gene weigth across selected samples |
| PlotOnACSN | Project ROMA results onto ACSN maps |
| PlotPCProjections | Plot PC projections score across selected samples |
| PlotRecurringGenes | Plot the weigth of genes appearing across multiple genesets |
| PlotSampleProjections | Plot sample score across selected samples |
| ReadGMTFile | Load a GMT file from a file |
| rRoma.R | Perform ROMA on a datasets |
| SelectFromInternalDB | Return a an internal DB using the provided search string |
| SelectFromMSIGdb | Return a subset of Msigdb containing the provided search... |
| SelectGeneSets | Select genesets accoding to specific conditions |
