CompareAcrossSamples: Compare ROMA scores across samples from different populations

In Albluca/rRoma: An r implementation of ROMA

Description

Compare ROMA scores across samples from different populations

Usage

CompareAcrossSamples(RomaData, Groups, Selected = NULL,
  TestMode = "Aov+Tuk", TestPV1 = 0.05, TestPV2 = 0.05,
  PlotDiag = FALSE, PlotXGSDiff = FALSE)

Arguments

RomaData	list, the analysis returned by rRoma
Groups	string vector, a vector of group identifier described by strings
Selected	The genesets used to perform the analysis
TestMode	string, the type of statistical methodology to assess sample difference. Currentyl only ANOVA + Tukey is implemented ("Aov+Tuk")
TestPV1	numeric between 0 and 1, the threshold PV for the initial test (ANOVA)
TestPV2	numeric between 0 and 1, the threshold PV for difference test (Tukey)
PlotDiag	boolean, should diagnostic plot be displyed?
PlotXGSDiff	boolean, should all the significant differences by considered?

Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.