Plot.Genesets: Plot genesets information

In Albluca/rRoma: An r implementation of ROMA

Description

Plot genesets information

Usage

Plot.Genesets(RomaData, Selected = NULL, GenesetMargin = 4,
  SampleMargin = 4, ColorGradient = colorRamps::blue2red(50),
  cluster_cols = FALSE, GroupInfo = NULL, HMTite = "Selected Genesets",
  AggByGroupsFL = list(), Normalize = FALSE, Transpose = FALSE)

Arguments

RomaData	list, the analysis returned by rRoma
Selected	vector, integer. The position of the genesets to plot
GenesetMargin	scalat, integer. The number of rows used to draw the geneset names.
SampleMargin	scalat, integer. The number of rows used to draw the sample names.
ColorGradient	vector, string. The colors used for the heatmap.
cluster_cols	boolean, should the samp^le be reordered according to the dendrogram?
GroupInfo	vector, character. A vector describing the group association of each sample.
HMTite	scalar, string. The title of the heatmap
AggByGroupsFL	list, string. A list of function names (as strings) that will be used to aggregate the geneset weigths and produce additional heatmaps.
Normalize	boolean, shuold weights be normalized to c(-1, 1) for each geneset
Transpose	boolean, should the samples by plotted on the rows instead of the columns?

Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.