ConvertNames: Conversion between gene naming convenctions and organisms

In Albluca/rRoma: An r implementation of ROMA

Description

Conversion between gene naming convenctions and organisms

Usage

ConvertNames(SourceOrganism = "hsapiens", TargetOrganism = "mmusculus",
  Genes, SourceTypes = "Names", TargetTypes = "Names", HomologyLevel = 0,
  HOST = NULL, PATH = NULL)

Arguments

SourceOrganism	Source organism (e.g., "hsapens" or "mmusculus"). Default is "hsapens".
TargetOrganism	Target organism (e.g., "hsapens" or "mmusculus"). Default is "mmusculus".
Genes	Vector of strings containing gene names. NAs can be present and will be removed
SourceTypes	Type of gene names used as input (currently either "Names" or "Ensembl"). Default is "Names".
TargetTypes	Type of gene names to be returned (currently either "Names" or "Ensembl"). Default is "Names".
HomologyLevel	minimal level of homology (0 by default)
HOST	alterntive host is the default one doe snot work
PATH	path of the alterntive host

Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.