ConvertModuleNames: Conversion between gene naming convenctions and organisms of...

In Albluca/rRoma: An r implementation of ROMA

Description

Conversion between gene naming convenctions and organisms of Modulelist

Usage

ConvertModuleNames(ModuleList, SourceOrganism = "hsapiens",
  TargetOrganism = "mmusculus", SourceTypes = "Names",
  TargetTypes = "Names", HomologyLevel = 0, HOST = NULL, PATH = NULL)

Arguments

ModuleList	The module list to be convert.
SourceOrganism	Source organism (e.g., "hsapens" or "mmusculus"). Default is "hsapens".
TargetOrganism	Target organism (e.g., "hsapens" or "mmusculus"). Default is "mmusculus".
SourceTypes	Type of gene names used as input (currently either "Names" or "Ensembl"). Default is "Names".
TargetTypes	Type of gene names to be returned (currently either "Names" or "Ensembl"). Default is "Names".
HomologyLevel	minimal level of homology (0 by default)
HOST	alterntive host is the default one doe snot work
PATH	path of the alterntive host

Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.